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GRCh37.p9

This assembly has been replaced. See current version

Description:: Genome Reference Consortium Human Build 37 patch release 9 (GRCh37.p9)
Organism name:: Homo sapiens (human)
BioProject:: PRJNA31257
Submitter:: Genome Reference Consortium
Date:: 2012/07/09
Synonyms:: hg19
Assembly type:: haploid-with-alt-loci
Release type:: patch
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000001405.10 (replaced)
RefSeq assembly accession:: GCF_000001405.21 (replaced)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 397958 [UID] 397208 [GenBank] 397958 [RefSeq]

See Genome Information for Homo sapiens

Pathogen Detection Resources

There are 1094 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000001405.29	≠	GCF_000001405.40	GRCh38.p14	Chromosome	Latest GenBank, Latest RefSeq
GCA_000001405.28	≠	GCF_000001405.39	GRCh38.p13	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.27	≠	GCF_000001405.38	GRCh38.p12	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.26	=	GCF_000001405.37	GRCh38.p11	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.25	=	GCF_000001405.36	GRCh38.p10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.24	=	GCF_000001405.35	GRCh38.p9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.23	=	GCF_000001405.34	GRCh38.p8	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.22	=	GCF_000001405.33	GRCh38.p7	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.21	=	GCF_000001405.32	GRCh38.p6	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.20	=	GCF_000001405.31	GRCh38.p5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.19	=	GCF_000001405.30	GRCh38.p4	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.18	=	GCF_000001405.29	GRCh38.p3	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.17	=	GCF_000001405.28	GRCh38.p2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.16	=	GCF_000001405.27	GRCh38.p1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.15	=	GCF_000001405.26	GRCh38	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.14	=	GCF_000001405.25	GRCh37.p13	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.13	=	GCF_000001405.24	GRCh37.p12	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.12	=	GCF_000001405.23	GRCh37.p11	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.11	=	GCF_000001405.22	GRCh37.p10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.10	=	GCF_000001405.21	GRCh37.p9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.9	n/a	n/a	GRCh37.p8	Chromosome	Replaced GenBank
GCA_000001405.8	n/a	n/a	GRCh37.p7	Chromosome	Replaced GenBank
GCA_000001405.7	n/a	n/a	GRCh37.p6	Chromosome	Replaced GenBank
GCA_000001405.6	=	GCF_000001405.17	GRCh37.p5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.5	n/a	n/a	GRCh37.p4	Chromosome	Replaced GenBank
GCA_000001405.4	n/a	n/a	GRCh37.p3	Chromosome	Replaced GenBank
GCA_000001405.3	=	GCF_000001405.14	GRCh37.p2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.2	n/a	n/a	GRCh37.p1	Chromosome	Replaced GenBank
GCA_000001405.1	=	GCF_000001405.13	GRCh37	Chromosome	Replaced GenBank, Replaced RefSeq
n/a	n/a	GCF_000001405.12	NCBI36	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.11	NCBI35	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.10	NCBI34	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.9	NCBI34	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.8	NCBI33	Chromosome	Replaced RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Status::Full annotation
Annotation Version::Homo sapiens Annotation Release 105
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::5.1
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics*

Number of regions with alternate loci or patches	140
Total sequence length	3,101,788,170
Total ungapped length	2,867,437,753
Gaps between scaffolds	271
Number of scaffolds	249
Scaffold N50	46,395,641
Scaffold L50	21
Number of contigs	350
Contig N50	38,508,932
Contig L50	24
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	27,054

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

Name	Location
REGION60	1:31872759-32017063
1P11	1:120471050-121346350
1Q21	1:143871003-150440213
REGION2	1:153673007-153838214
MTX1	1:155180173-155275036
REGION3	1:198339213-198694304
1Q32	1:206072708-206940869
REGION1	1:248865779-249098883
REGION4	2:36453102-36590458
REGION55	2:95326172-95618108
REGION44	2:149790583-149880633
SPC25	2:169686873-169793704
REGION54	2:243059660-243189373
REGION73	3:11856742-12027971
SEMA3B	3:50267585-50368277
VPRBP	3:51416109-51584055
DNAH12	3:57369478-57399969
REGION64	3:60558332-60952039
SLC25A26	3:66270271-66308065
REGION5	3:151307154-151477286
REGION6	4:34519577-34885480
LPHN3	4:62777687-62877254
UGT2B17	4:69170077-69878175
REGION45	4:75382210-75689879
REGION7	4:156756530-156908416
REGION56	4:190828226-191044276
REGION9	5:12681538-12744122
REGION61	5:29036605-29254576
SMA	5:68512646-70910270
MCTP1	5:94505561-94590195
PPIP5K2	5:102420838-102687150
REGION8	5:161800673-161968654
MHC	6:28477797-33448354
REGION10	6:80059725-80156628
LAMA4	6:112323682-112586593
REGION48	7:56835596-57190579
REGION46	7:57342227-57586048
WILLIAMS	7:71935722-75921852
REGION47	7:98260131-98556215
SH2B2	7:101718951-102072447
COPG2	7:129984424-130721755
REGION11	7:141333209-141446383
TRB	7:141557850-142778624
REGION62	8:1965390-2498608
JRK	8:143711229-143813536
EPPK1_SPATC1	8:144743526-145146062
SCXB	8:145285645-145659901
REGION14	9:7428994-7577169
CBWD3	9:70835469-71130847
REGION13	9:72028659-72092013
MAMDC2	9:72639029-72804234
REGION15	9:90793962-90842895
ABO	9:136049442-136369192
REGION12	9:139136890-139252828
REGION57	10:60001-224405
AKR1CL1	10:5012527-5450243
FAM23A_MRC1	10:17613209-18252930
REGION16	10:27574584-27706537
REGION18	10:45670681-45964419
10Q11	10:46224334-51664310
ZNF518A	10:97861451-98039369
PNLIPRP2	10:118348517-118544777
REGION17	10:133258319-133381404
SPON1	11:13963464-14425744
CALCA	11:14873971-15041407
REGION19	11:25191953-25340626
REGION49	11:49862648-50121284
OLFACTORY_REGION_1	11:55956728-56641043
REGION63	11:69614786-69922571
B3GNT6	11:76709408-76900812
CWC15_SRSF8	11:94611846-94852618
MMP12	11:102702497-102822936
DIXDC1_ALG9	11:111618733-111945380
NCAM1	11:112687997-113234431
TREH	11:118245278-118653701
SLC37A4	11:118849111-118957986
REGION50	12:60001-282464
EMG1	12:6907581-7178849
REGION58	12:10953894-11330216
REGION21	12:28148967-28263711
REGION22	12:58326520-58486538
REGION23	12:59323046-59454651
REGION24	12:101505377-101652073
REGION20	12:126711744-126890020
GALNT9	12:132806993-132967794
REGION51	13:115085142-115109878
REGION25	15:28557187-28842093
MEGF11	15:66200521-66577156
SYNM	15:99529037-99696045
REGION26	16:55822434-56002460
REGION74	16:57774022-57871358
SNTB2	16:69174054-69258593
RPH3AL	17:1-252428
FAM101B	17:252429-296626
REGION27	17:21250948-21566608
SLC46A1	17:26645159-26840019
MYO19	17:34442621-35005379
SOCS7	17:36372617-36711255
KRTAP_REGION_1	17:39006985-39589187
TTC25	17:39869611-40277911
MAPT	17:43384864-44913631
PECAM1	17:62273514-62649312
REGION65	17:65936106-66324470
REGION28	17:68302419-68520360
REGION30	17:75216812-75295408
REGION69	17:77412077-77766016
BAHCC1	17:79319163-79498447
REGION31	18:47818564-48101162
REGION32	18:49189306-49348012
REGION33	18:65090960-65219788
REGION34	18:70600357-70692016
REGION35	18:76253467-76412030
REGION36	18:76694886-76848997
REGION66	19:8634915-8926179
REGION52	19:20193557-20845946
ZNF66	19:20845947-21225187
REGION37	19:21831092-21991834
REGION39	19:22303652-22483468
REGION38	19:34643165-34791855
LRC	19:54528888-55595686
REGION40	20:17751747-17874115
DLGAP4	20:34883261-34994224
REGION53	20:61031539-61267733
REGION41	21:15796462-15847792
REGION42	21:23474793-23669288
REGION43	21:34141390-34210247
TMEM50B	21:34777735-34884866
CLTCL1	22:19134297-19346604
APOBEC	22:39280299-39407165
CYP2D6	22:42477964-42648568
PAR#1	X:60001-2699520
REGION59	X:803878-1227822
REGION75	X:36202464-37669766
DGKK	X:50036540-50285784
REGION76	X:75200416-77130133
TEX13A	X:104423968-104489003
REGION67	X:152828210-152898056
PAR#2	X:154931044-155260560
PAR#1	Y:10001-2649520
PAR#2	Y:59034050-59363566

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000663.1	=	NC_000001.10	2
Chromosome 2	CM000664.1	=	NC_000002.11	0
Chromosome 3	CM000665.1	=	NC_000003.11	0
Chromosome 4	CM000666.1	=	NC_000004.11	2
Chromosome 5	CM000667.1	=	NC_000005.9	0
Chromosome 6	CM000668.1	=	NC_000006.11	0
Chromosome 7	CM000669.1	=	NC_000007.13	1
Chromosome 8	CM000670.1	=	NC_000008.10	2
Chromosome 9	CM000671.1	=	NC_000009.11	4
Chromosome 10	CM000672.1	=	NC_000010.10	0
Chromosome 11	CM000673.1	=	NC_000011.9	1
Chromosome 12	CM000674.1	=	NC_000012.11	0
Chromosome 13	CM000675.1	=	NC_000013.10	0
Chromosome 14	CM000676.1	=	NC_000014.8	0
Chromosome 15	CM000677.1	=	NC_000015.9	0
Chromosome 16	CM000678.1	=	NC_000016.9	0
Chromosome 17	CM000679.1	=	NC_000017.10	4
Chromosome 18	CM000680.1	=	NC_000018.9	1
Chromosome 19	CM000681.1	=	NC_000019.9	2
Chromosome 20	CM000682.1	=	NC_000020.10	0
Chromosome 21	CM000683.1	=	NC_000021.8	1
Chromosome 22	CM000684.1	=	NC_000022.10	0
Chromosome X	CM000685.1	=	NC_000023.10	0
Chromosome Y	CM000686.1	=	NC_000024.9	0
unplaced	n/a	n/a	n/a	39

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID	Patch type
HG989_PATCH	1	GL949741.1	=	NW_003571030.1	fix
HG1292_PATCH	1	JH636053.1	=	NW_003871056.1	fix
HG1287_PATCH	1	JH636052.2	=	NW_003871055.1	fix
HSCHR1_1_CTG31	1	GL383518.1	=	NW_003315905.1	novel
HSCHR1_2_CTG31	1	GL383519.1	=	NW_003315906.1	novel
HSCHR1_3_CTG31	1	GL383520.1	=	NW_003315907.1	novel
HG1293_PATCH	1	JH636054.1	=	NW_003871057.1	fix
HG999_1_PATCH	1	GL383516.1	=	NW_003315903.1	fix
HG999_2_PATCH	1	GL383517.1	=	NW_003315904.1	fix
HSCHR2_1_CTG1	2	GL383521.1	=	NW_003315908.1	novel
HG686_PATCH	2	GL877871.1	=	NW_003571032.1	fix
HSCHR2_2_CTG12	2	GL582966.2	=	NW_003571033.2	novel
HSCHR2_1_CTG12	2	GL383522.1	=	NW_003315909.1	novel
HG1007_PATCH	2	GL877870.2	=	NW_003571031.1	fix
HSCHR3_1_CTG1	3	JH636055.1	=	NW_003871060.1	novel
HG325_PATCH	3	JH159132.1	=	NW_003871059.1	fix
HG186_PATCH	3	GL383523.1	=	NW_003315910.1	fix
HG280_PATCH	3	GL383524.1	=	NW_003315911.1	fix
HG1091_PATCH	3	JH159131.1	=	NW_003871058.1	fix
HG991_PATCH	3	GL383525.1	=	NW_003315912.1	fix
HSCHR3_1_CTG2_1	3	GL383526.1	=	NW_003315913.1	novel
HSCHR4_1_CTG6	4	GL383528.1	=	NW_003315915.1	novel
HSCHR4_2_CTG9	4	GL383529.1	=	NW_003315916.1	novel
HG706_PATCH	4	GL582967.1	=	NW_003571035.1	fix
HSCHR4_1_CTG12	4	GL383527.1	=	NW_003315914.1	novel
HG1032_PATCH	4	GL877872.1	=	NW_003571034.1	fix
HSCHR5_2_CTG1	5	GL383532.1	=	NW_003315920.1	novel
HSCHR5_3_CTG1	5	GL949742.1	=	NW_003571036.1	novel
HSCHR5_1_CTG1	5	GL339449.2	=	NW_003315917.2	novel
HSCHR5_1_CTG2	5	GL383530.1	=	NW_003315918.1	novel
HG1063_PATCH	5	JH159133.1	=	NW_003871061.1	fix
HSCHR5_1_CTG5	5	GL383531.1	=	NW_003315919.1	novel
HG1322_PATCH	6	JH636057.1	=	NW_003871063.1	fix
HSCHR6_1_CTG5	6	GL383533.1	=	NW_003315921.1	novel
HG1304_PATCH	6	JH636056.1	=	NW_003871062.1	fix
HG736_PATCH	7	GL582970.1	=	NW_003571039.1	fix
HG14_PATCH	7	GL582969.1	=	NW_003571038.1	fix
HG1257_PATCH	7	JH159134.2	=	NW_003871064.1	fix
HG946_PATCH	7	GL582972.1	=	NW_003571041.1	fix
HG115_PATCH	7	GL582968.1	=	NW_003571037.1	fix
HG1308_PATCH	7	JH636058.1	=	NW_003871065.1	fix
HSCHR7_1_CTG6	7	GL383534.2	=	NW_003315922.2	novel
HG7_PATCH	7	GL582971.1	=	NW_003571040.1	fix
HG19_PATCH	8	GL949743.1	=	NW_003571042.1	fix
HG418_PATCH	8	JH159135.1	=	NW_003871066.1	fix
HG104_HG975_PATCH	8	GL383535.1	=	NW_003315923.1	fix
HG243_PATCH	8	GL383536.1	=	NW_003315924.1	fix
HSCHR9_1_CTG1	9	GL383539.1	=	NW_003315928.1	novel
HG962_PATCH	9	JH636059.1	=	NW_003871067.1	fix
HSCHR9_1_CTG35	9	GL383540.1	=	NW_003315929.1	novel
HSCHR9_2_CTG35	9	GL383541.1	=	NW_003315930.1	novel
HSCHR9_3_CTG35	9	GL383542.1	=	NW_003315931.1	novel
HG79_PATCH	9	GL339450.1	=	NW_003315925.1	fix
HG998_1_PATCH	9	GL383537.1	=	NW_003315926.1	fix
HG998_2_PATCH	9	GL383538.1	=	NW_003315927.1	fix
HG905_PATCH	10	GL877873.1	=	NW_003571043.1	fix
HG871_PATCH	10	JH636060.1	=	NW_003871071.1	fix
HG544_PATCH	10	GL383543.1	=	NW_003315932.1	fix
HSCHR10_1_CTG2	10	GL383545.1	=	NW_003315934.1	novel
HSCHR10_1_CTG5	10	GL383546.1	=	NW_003315935.1	novel
HG1211_PATCH	10	JH591181.2	=	NW_003871068.1	fix
HG339_PATCH	10	JH591183.1	=	NW_003871070.1	fix
HG311_PATCH	10	JH591182.1	=	NW_003871069.1	fix
HG995_PATCH	10	GL383544.1	=	NW_003315933.1	fix
HG256_PATCH	11	JH591184.1	=	NW_003871075.1	fix
HG873_PATCH	11	JH591185.1	=	NW_003871082.1	fix
HSCHR11_1_CTG1_1	11	GL383547.1	=	NW_003315936.1	novel
HG281_PATCH	11	GL582973.1	=	NW_003571045.1	fix
HG142_HG150_NOVEL_TEST	11	JH159136.1	=	NW_003871073.1	novel
HG151_NOVEL_TEST	11	JH159137.1	=	NW_003871074.1	novel
HG536_PATCH	11	GL949744.1	=	NW_003571046.1	fix
HG414_PATCH	11	JH159143.1	=	NW_003871081.1	fix
HG348_PATCH	11	JH159141.2	=	NW_003871079.1	fix
HG305_PATCH	11	JH159139.1	=	NW_003871077.1	fix
HG388_HG400_PATCH	11	JH159142.2	=	NW_003871080.1	fix
HG306_PATCH	11	JH159140.1	=	NW_003871078.1	fix
HG122_PATCH	11	JH720443.1	=	NW_003871072.1	fix
HG299_PATCH	11	JH159138.1	=	NW_003871076.1	fix
HG858_PATCH	12	GL582974.1	=	NW_003571048.1	fix
HSCHR12_1_CTG1	12	GL877875.1	=	NW_003571049.1	novel
HG344_PATCH	12	JH720444.1	=	NW_003871083.1	fix
HG1133_PATCH	12	GL949745.1	=	NW_003571047.1	novel
HSCHR12_2_CTG2	12	GL877876.1	=	NW_003571050.1	novel
HSCHR12_1_CTG2	12	GL383549.1	=	NW_003315938.1	novel
HSCHR12_1_CTG2_1	12	GL383550.1	=	NW_003315939.1	novel
HSCHR12_2_CTG2_1	12	GL383552.1	=	NW_003315941.1	novel
HSCHR12_3_CTG2_1	12	GL383553.2	=	NW_003315942.2	novel
HSCHR12_1_CTG5	12	GL383551.1	=	NW_003315940.1	novel
HG996_PATCH	12	GL383548.1	=	NW_003315937.1	fix
HG531_PATCH	13	GL582975.1	=	NW_003571051.1	fix
HSCHR15_1_CTG4	15	GL383554.1	=	NW_003315943.1	novel
HSCHR15_1_CTG8	15	GL383555.1	=	NW_003315944.1	novel
HG971_PATCH	15	JH720445.1	=	NW_003871084.1	fix
HSCHR16_1_CTG3_1	16	GL383556.1	=	NW_003315945.1	novel
HG1208_PATCH	16	JH720446.1	=	NW_003871085.1	fix
HSCHR16_2_CTG3_1	16	GL383557.1	=	NW_003315946.1	novel
HSCHR17_1_CTG1	17	GL383563.1	=	NW_003315952.1	novel
HG990_PATCH	17	GL383562.1	=	NW_003315951.1	fix
HG987_PATCH	17	GL383561.1	=	NW_003315950.1	fix
HG883_PATCH	17	JH159145.1	=	NW_003871090.1	fix
HG75_PATCH	17	GL383560.1	=	NW_003315949.1	fix
HG745_PATCH	17	GL383559.1	=	NW_003315948.1	fix
HSCHR17_4_CTG4	17	JH159146.1	=	NW_003871091.1	novel
HSCHR17_6_CTG4	17	JH159148.1	=	NW_003871093.1	novel
HSCHR17_5_CTG4	17	JH159147.1	=	NW_003871092.1	novel
HSCHR17_1_CTG4	17	GL383564.1	=	NW_003315953.1	novel
HG185_PATCH	17	GL582976.1	=	NW_003571052.1	fix
HG1146_PATCH	17	JH720447.1	=	NW_003871086.1	fix
HG183_PATCH	17	GL383558.1	=	NW_003315947.1	fix
HG747_PATCH	17	JH159144.1	=	NW_003871088.1	fix
HSCHR17_2_CTG4	17	GL383565.1	=	NW_003315954.1	novel
HSCHR17_3_CTG4	17	GL383566.1	=	NW_003315955.1	novel
HG748_PATCH	17	JH591186.1	=	NW_003871089.1	fix
HG271_PATCH	17	JH636061.1	=	NW_003871087.1	fix
HSCHR18_1_CTG1_1	18	GL383567.1	=	NW_003315956.1	novel
HSCHR18_2_CTG1_1	18	GL383570.1	=	NW_003315959.1	novel
HSCHR18_2_CTG2	18	GL383571.1	=	NW_003315960.1	novel
HSCHR18_1_CTG2	18	GL383568.1	=	NW_003315957.1	novel
HSCHR18_1_CTG2_1	18	GL383569.1	=	NW_003315958.1	novel
HSCHR18_2_CTG2_1	18	GL383572.1	=	NW_003315961.1	novel
HG729_PATCH	19	JH159149.1	=	NW_003871094.1	fix
HG730_PATCH	19	GL582977.1	=	NW_003571053.1	fix
HSCHR19_1_CTG3	19	GL383573.1	=	NW_003315962.1	novel
HSCHR19_2_CTG3	19	GL383575.2	=	NW_003315964.2	novel
HSCHR19_3_CTG3	19	GL383576.1	=	NW_003315965.1	novel
HSCHR19_1_CTG3_1	19	GL383574.1	=	NW_003315963.1	novel
HSCHR19LRC_COX1_CTG1	19	GL949746.1	=	NW_003571054.1	novel
HSCHR19LRC_COX2_CTG1	19	GL949747.1	=	NW_003571055.1	novel
HSCHR19LRC_LRC_I_CTG1	19	GL949748.1	=	NW_003571056.1	novel
HSCHR19LRC_LRC_J_CTG1	19	GL949749.1	=	NW_003571057.1	novel
HSCHR19LRC_LRC_S_CTG1	19	GL949750.1	=	NW_003571058.1	novel
HSCHR19LRC_LRC_T_CTG1	19	GL949751.1	=	NW_003571059.1	novel
HSCHR19LRC_PGF1_CTG1	19	GL949752.1	=	NW_003571060.1	novel
HSCHR19LRC_PGF2_CTG1	19	GL949753.1	=	NW_003571061.1	novel
HSCHR20_1_CTG1	20	GL383577.1	=	NW_003315966.1	novel
HG144_PATCH	20	JH720448.1	=	NW_003871095.1	fix
HG506_HG507_HG1000_PATCH	20	GL582979.2	=	NW_003571063.2	fix
HSCHR21_1_CTG1_1	21	GL383578.1	=	NW_003315967.1	novel
HSCHR21_2_CTG1_1	21	GL383579.1	=	NW_003315968.1	novel
HSCHR21_3_CTG1_1	21	GL383580.1	=	NW_003315969.1	novel
HSCHR21_4_CTG1_1	21	GL383581.1	=	NW_003315970.1	novel
HG329_PATCH	22	JH720449.1	=	NW_003871096.1	fix
HSCHR22_1_CTG2	22	GL383583.1	=	NW_003315972.1	novel
HSCHR22_1_CTG1	22	GL383582.1	=	NW_003315971.1	novel
HG480_HG481_PATCH	X	GL877877.1	=	NW_003571064.1	fix
HG1423_PATCH	X	JH720451.1	=	NW_003871098.1	fix
HG1424_PATCH	X	JH720452.1	=	NW_003871099.1	fix
HG1253_PATCH	X	JH720450.1	=	NW_003871097.1	fix
HG1425_PATCH	X	JH720453.1	=	NW_003871100.1	fix
HG1426_PATCH	X	JH720454.1	=	NW_003871101.1	fix
HG375_PATCH	X	JH720455.1	=	NW_003871102.1	fix
HG681_PATCH	X	JH159150.1	=	NW_003871103.1	fix

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HG999_1_PATCH	1	GL383516.1	=	NW_003315903.1	fix patch
HG999_2_PATCH	1	GL383517.1	=	NW_003315904.1	fix patch

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR6_MHC_APD_CTG1	6	GL000250.1	=	NT_167244.1	alt-scaffold
HSCHR6_MHC_COX_CTG1	6	GL000251.1	=	NT_113891.2	alt-scaffold
HSCHR6_MHC_DBB_CTG1	6	GL000252.1	=	NT_167245.1	alt-scaffold
HSCHR6_MHC_MANN_CTG1	6	GL000253.1	=	NT_167246.1	alt-scaffold
HSCHR6_MHC_MCF_CTG1	6	GL000254.1	=	NT_167247.1	alt-scaffold
HSCHR6_MHC_QBL_CTG1	6	GL000255.1	=	NT_167248.1	alt-scaffold
HSCHR6_MHC_SSTO_CTG1	6	GL000256.1	=	NT_167249.1	alt-scaffold
HG1322_PATCH	6	JH636057.1	=	NW_003871063.1	fix patch

Assembly

Genome Assembly

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GRCh37.p9

See Genome Information for Homo sapiens

Pathogen Detection Resources

There are 1094 assemblies for this organism

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Global assembly definition

Regions

Assembly statistics

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR17_1_CTG5	17	GL000258.1	=	NT_167251.1	alt-scaffold
HG1146_PATCH	17	JH720447.1	=	NW_003871086.1	fix patch

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	3,101,788,170	249	2,867,437,753	46,395,641	101	271
Chromosome 1	AllAssembled moleculeUnlocalized scaffolds	249,904,550249,250,621653,929	21192	225,934,550225,280,621653,929	57,411,34957,411,349547,496	19190	22220
Chromosome 2	Assembled molecule	243,199,373	13	238,204,522	68,452,323	6	15
Chromosome 3	Assembled molecule	198,022,430	4	194,797,140	100,537,107	0	7
Chromosome 4	AllAssembled moleculeUnlocalized scaffolds	191,535,534191,154,276381,258	12102	188,042,934187,661,676381,258	115,591,997115,591,997191,469	110	12120
Chromosome 5	Assembled molecule	180,915,260	5	177,695,260	46,395,641	1	6
Chromosome 6	Assembled molecule	171,115,067	3	167,395,067	58,720,166	6	8
Chromosome 7	AllAssembled moleculeUnlocalized scaffolds	159,321,559159,138,663182,896	871	155,536,559155,353,663182,896	50,360,63150,360,631182,896	990	880
Chromosome 8	AllAssembled moleculeUnlocalized scaffolds	146,440,111146,364,02276,089	972	142,964,911142,888,92275,989	38,440,85238,440,85238,914	211	990
Chromosome 9	AllAssembled moleculeUnlocalized scaffolds	141,696,573141,213,431483,142	28244	120,626,573120,143,431483,142	62,237,59262,237,592169,874	15150	29290
Chromosome 10	Assembled molecule	135,534,747	8	131,314,747	79,420,533	8	12
Chromosome 11	AllAssembled moleculeUnlocalized scaffolds	135,046,619135,006,51640,103	541	131,169,619131,129,51640,103	41,593,37941,593,37940,103	440	11110
Chromosome 12	Assembled molecule	133,851,895	6	130,481,395	71,516,776	4	8
Chromosome 13	Assembled molecule	115,169,878	5	95,589,878	67,740,324	0	10
Chromosome 14	Assembled molecule	107,349,540	1	88,289,540	88,289,540	0	5
Chromosome 15	Assembled molecule	102,531,392	7	81,694,769	53,620,202	2	10
Chromosome 16	Assembled molecule	90,354,753	4	78,884,753	42,003,582	1	10
Chromosome 17	AllAssembled moleculeUnlocalized scaffolds	81,529,60781,195,210334,397	1064	78,129,60777,795,210334,397	44,983,20144,983,201174,588	220	550
Chromosome 18	AllAssembled moleculeUnlocalized scaffolds	78,081,51078,077,2484,262	431	74,661,51074,657,2484,262	25,808,11225,808,1124,262	220	770
Chromosome 19	AllAssembled moleculeUnlocalized scaffolds	59,380,84159,128,983251,858	642	56,060,84155,808,983251,858	31,387,20131,387,201159,169	110	880
Chromosome 20	Assembled molecule	63,025,520	4	59,505,520	31,409,461	2	9
Chromosome 21	AllAssembled moleculeUnlocalized scaffolds	48,157,57748,129,89527,682	981	35,134,22435,106,64227,582	28,617,43028,617,43027,682	981	14140
Chromosome 22	Assembled molecule	51,304,566	4	34,894,566	29,755,346	0	9
Chromosome X	Assembled molecule	155,270,560	17	151,100,560	27,775,034	5	21
Chromosome Y	Assembled molecule	59,373,566	17	25,653,566	6,265,435	2	16
unplaced	Assembled molecule	3,675,142	39	3,675,142	164,239	0	0

Region Name	Location	Scaffold Count	Total Length	Ungapped Length	Scaffold N50	Spanned Gaps
REGION60	1:31872759-32017063	1	151,551	151,551	151,551	0
1P11	1:120471050-121346350	1	1,447,017	1,397,017	1,447,017	1
1Q21	1:143871003-150440213	1	7,107,865	7,007,865	7,107,865	2
REGION2	1:153673007-153838214	1	182,439	182,439	182,439	0
MTX1	1:155180173-155275036	1	110,268	110,268	110,268	0
REGION3	1:198339213-198694304	1	366,579	366,579	366,579	0
1Q32	1:206072708-206940869	1	758,378	758,378	758,378	0
REGION1	1:248865779-249098883	2	98,668	98,668	49,352	0
REGION4	2:36453102-36590458	1	143,390	143,390	143,390	0
REGION55	2:95326172-95618108	1	389,939	389,939	389,939	0
REGION44	2:149790583-149880633	1	96,131	96,131	96,131	0
SPC25	2:169686873-169793704	1	123,821	123,821	123,821	0
REGION54	2:243059660-243189373	1	66,021	66,021	66,021	0
REGION73	3:11856742-12027971	1	173,151	173,151	173,151	0
SEMA3B	3:50267585-50368277	1	100,694	100,694	100,694	0
VPRBP	3:51416109-51584055	1	171,362	171,362	171,362	0
DNAH12	3:57369478-57399969	1	78,793	78,793	78,793	0
REGION64	3:60558332-60952039	1	393,769	393,769	393,769	0
SLC25A26	3:66270271-66308065	1	65,063	65,063	65,063	0
REGION5	3:151307154-151477286	1	180,671	180,671	180,671	0
REGION6	4:34519577-34885480	1	376,187	376,187	376,187	0
LPHN3	4:62777687-62877254	1	121,345	121,345	121,345	0
UGT2B17	4:69170077-69878175	1	590,426	590,426	590,426	0
REGION45	4:75382210-75689879	1	248,177	248,177	248,177	0
REGION7	4:156756530-156908416	1	164,536	164,536	164,536	0
REGION56	4:190828226-191044276	1	297,485	247,485	297,485	1
REGION9	5:12681538-12744122	1	82,728	82,728	82,728	0
REGION61	5:29036605-29254576	1	226,852	226,852	226,852	0
SMA	5:68512646-70910270	1	1,612,928	1,512,928	1,612,928	1
MCTP1	5:94505561-94590195	1	101,241	101,241	101,241	0
PPIP5K2	5:102420838-102687150	1	266,316	266,316	266,316	0
REGION8	5:161800673-161968654	1	173,459	173,459	173,459	0
MHC	6:28477797-33448354	8	33,285,464	27,885,143	4,683,263	98
REGION10	6:80059725-80156628	1	124,736	124,736	124,736	0
LAMA4	6:112323682-112586593	1	262,912	262,912	262,912	0
REGION48	7:56835596-57190579	1	354,970	354,970	354,970	0
REGION46	7:57342227-57586048	1	251,823	251,823	251,823	0
WILLIAMS	7:71935722-75921852	1	3,821,770	3,821,770	3,821,770	0
REGION47	7:98260131-98556215	1	327,774	327,774	327,774	0
SH2B2	7:101718951-102072447	1	356,330	356,330	356,330	0
COPG2	7:129984424-130721755	1	716,227	666,227	716,227	1
REGION11	7:141333209-141446383	1	119,183	119,183	119,183	0
TRB	7:141557850-142778624	1	1,284,284	1,284,284	1,284,284	0
REGION62	8:1965390-2498608	1	608,579	608,579	608,579	0
JRK	8:143711229-143813536	1	102,251	102,251	102,251	0
EPPK1_SPATC1	8:144743526-145146062	1	429,806	429,806	429,806	0
SCXB	8:145285645-145659901	1	203,777	203,777	203,777	0
REGION14	9:7428994-7577169	1	162,988	162,988	162,988	0
CBWD3	9:70835469-71130847	1	295,379	295,379	295,379	0
REGION13	9:72028659-72092013	1	71,551	71,551	71,551	0
MAMDC2	9:72639029-72804234	1	171,286	171,286	171,286	0
REGION15	9:90793962-90842895	1	60,032	60,032	60,032	0
ABO	9:136049442-136369192	1	330,164	330,164	330,164	0
REGION12	9:139136890-139252828	2	111,716	111,716	62,435	0
REGION57	10:60001-224405	1	168,465	168,465	168,465	0
AKR1CL1	10:5012527-5450243	1	437,946	437,946	437,946	0
FAM23A_MRC1	10:17613209-18252930	1	392,792	392,792	392,792	0
REGION16	10:27574584-27706537	1	179,254	179,254	179,254	0
REGION18	10:45670681-45964419	1	309,802	309,802	309,802	0
10Q11	10:46224334-51664310	1	2,281,126	2,231,126	2,281,126	1
ZNF518A	10:97861451-98039369	1	177,920	177,920	177,920	0
PNLIPRP2	10:118348517-118544777	1	196,262	196,262	196,262	0
REGION17	10:133258319-133381404	1	128,378	128,378	128,378	0
SPON1	11:13963464-14425744	1	462,282	462,282	462,282	0
CALCA	11:14873971-15041407	1	167,437	167,437	167,437	0
REGION19	11:25191953-25340626	1	154,407	154,407	154,407	0
REGION49	11:49862648-50121284	1	321,004	321,004	321,004	0
OLFACTORY_REGION_1	11:55956728-56641043	2	392,407	392,407	200,998	0
REGION63	11:69614786-69922571	1	276,448	276,448	276,448	0
B3GNT6	11:76709408-76900812	1	191,402	191,402	191,402	0
CWC15_SRSF8	11:94611846-94852618	1	240,775	240,775	240,775	0
MMP12	11:102702497-102822936	1	120,441	120,441	120,441	0
DIXDC1_ALG9	11:111618733-111945380	1	326,647	326,647	326,647	0
NCAM1	11:112687997-113234431	1	546,435	546,435	546,435	0
TREH	11:118245278-118653701	1	408,430	408,430	408,430	0
SLC37A4	11:118849111-118957986	1	108,875	108,875	108,875	0
REGION50	12:60001-282464	2	330,611	330,611	167,313	0
EMG1	12:6907581-7178849	1	273,128	273,128	273,128	0
REGION58	12:10953894-11330216	2	780,880	780,880	408,271	0
REGION21	12:28148967-28263711	1	120,804	120,804	120,804	0
REGION22	12:58326520-58486538	1	169,178	169,178	169,178	0
REGION23	12:59323046-59454651	1	138,655	138,655	138,655	0
REGION24	12:101505377-101652073	1	152,874	152,874	152,874	0
REGION20	12:126711744-126890020	1	184,319	184,319	184,319	0
GALNT9	12:132806993-132967794	1	165,247	165,247	165,247	0
REGION51	13:115085142-115109878	1	34,662	34,662	34,662	0
REGION25	15:28557187-28842093	1	296,527	296,527	296,527	0
MEGF11	15:66200521-66577156	1	388,773	388,773	388,773	0
SYNM	15:99529037-99696045	1	170,033	170,033	170,033	0
REGION26	16:55822434-56002460	1	192,462	192,462	192,462	0
REGION74	16:57774022-57871358	1	97,345	97,345	97,345	0
SNTB2	16:69174054-69258593	1	89,672	89,672	89,672	0
RPH3AL	17:1-252428	1	270,261	270,261	270,261	0
FAM101B	17:252429-296626	1	45,551	45,551	45,551	0
REGION27	17:21250948-21566608	1	406,963	406,963	406,963	0
SLC46A1	17:26645159-26840019	1	194,862	194,862	194,862	0
MYO19	17:34442621-35005379	1	534,288	534,288	534,288	0
SOCS7	17:36372617-36711255	1	338,640	338,640	338,640	0
KRTAP_REGION_1	17:39006985-39589187	4	569,697	569,697	133,151	0
TTC25	17:39869611-40277911	1	412,535	412,535	412,535	0
MAPT	17:43384864-44913631	2	2,135,213	1,985,213	1,680,828	3
PECAM1	17:62273514-62649312	1	457,041	457,041	457,041	0
REGION65	17:65936106-66324470	1	388,340	388,340	388,340	0
REGION28	17:68302419-68520360	1	223,995	223,995	223,995	0
REGION30	17:75216812-75295408	1	90,219	90,219	90,219	0
REGION69	17:77412077-77766016	1	376,223	376,223	376,223	0
BAHCC1	17:79319163-79498447	1	186,059	186,059	186,059	0
REGION31	18:47818564-48101162	1	289,831	289,831	289,831	0
REGION32	18:49189306-49348012	1	164,789	164,789	164,789	0
REGION33	18:65090960-65219788	1	198,278	148,278	198,278	1
REGION34	18:70600357-70692016	1	104,552	104,552	104,552	0
REGION35	18:76253467-76412030	1	167,950	167,950	167,950	0
REGION36	18:76694886-76848997	1	159,547	159,547	159,547	0
REGION66	19:8634915-8926179	1	245,473	245,473	245,473	0
REGION52	19:20193557-20845946	1	580,393	580,393	580,393	0
ZNF66	19:20845947-21225187	1	385,657	385,657	385,657	0
REGION37	19:21831092-21991834	1	170,222	170,222	170,222	0
REGION39	19:22303652-22483468	1	188,024	188,024	188,024	0
REGION38	19:34643165-34791855	1	155,864	155,864	155,864	0
LRC	19:54528888-55595686	8	7,726,027	4,983,027	1,002,682	17
REGION40	20:17751747-17874115	1	128,385	128,385	128,385	0
DLGAP4	20:34883261-34994224	1	70,483	70,483	70,483	0
REGION53	20:61031539-61267733	1	179,899	179,899	179,899	0
REGION41	21:15796462-15847792	1	63,917	63,917	63,917	0
REGION42	21:23474793-23669288	1	201,198	201,198	201,198	0
REGION43	21:34141390-34210247	1	74,652	74,652	74,652	0
TMEM50B	21:34777735-34884866	1	116,690	116,690	116,690	0
CLTCL1	22:19134297-19346604	1	212,298	212,298	212,298	0
APOBEC	22:39280299-39407165	1	96,924	96,924	96,924	0
CYP2D6	22:42477964-42648568	1	158,507	158,507	158,507	0
REGION59	X:803878-1227822	1	284,527	284,527	284,527	0
REGION75	X:36202464-37669766	2	1,421,298	1,421,298	898,979	0
DGKK	X:50036540-50285784	1	249,246	249,246	249,246	0
REGION76	X:75200416-77130133	2	1,893,086	1,893,086	1,461,188	0
TEX13A	X:104423968-104489003	1	65,034	65,034	65,034	0
REGION67	X:152828210-152898056	1	69,850	69,850	69,850	0

Unit Name	Scaffold Count	Total Length	Ungapped Length	Scaffold N50	Spanned Gaps
PATCHES	152	58,590,322	55,346,974	608,579	27
ALT_REF_LOCI_1	1	4,622,290	2,320,747	4,622,290	28
ALT_REF_LOCI_2	1	4,795,371	4,795,371	4,795,371	0
ALT_REF_LOCI_3	1	4,610,396	4,204,302	4,610,396	10
ALT_REF_LOCI_4	1	4,683,263	4,100,741	4,683,263	16
ALT_REF_LOCI_5	1	4,833,398	3,794,911	4,833,398	22
ALT_REF_LOCI_6	1	4,611,984	4,295,325	4,611,984	5
ALT_REF_LOCI_7	1	4,928,567	4,173,551	4,928,567	17
ALT_REF_LOCI_8	1	590,426	590,426	590,426	0
ALT_REF_LOCI_9	1	1,680,828	1,580,828	1,680,828	2