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Source database (GenBank or RefSeq) File type

ASM1607732v2

Organism name:

Equus asinus (ass)

Infraspecific name:

Breed: Dezhou

Sex:

male

BioSample:

SAMN08939908

BioProject:

PRJNA431818

Submitter:

Dairy Cattle Research Center, Shandong Academy of Agricultural Sciences

Date:

2021/10/14

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_016077325.2 (latest)

RefSeq assembly accession:

GCF_016077325.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JADWZW02

Assembly method:

SOAPdenovo v. 2.04.4; DBG2OLC v. 1; 3D-DNA v. 170123

Expected final version:

yes

Genome coverage:

211.0x

Sequencing technology:

Illumina HiSeq; PacBio Sequel; Hi-C

IDs: 11215641 [UID] 29568328 [GenBank] 29658438 [RefSeq]

See Genome Information for Equus asinus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_016077325.2	≠	GCF_016077325.2	ASM1607732v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_016077325.1	n/a	n/a	EquAsi1.0	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	2,431,907,375
Total ungapped length	2,428,378,425
Gaps between scaffolds	0
Number of scaffolds	50
Scaffold N50	98,589,534
Scaffold L50	10
Number of contigs	1,468
Contig N50	25,073,460
Contig L50	33
Total number of chromosomes and plasmids	32
Number of component sequences (WGS or clone)	50

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM027690.2	=	NC_052177.1	0
Chromosome 2	CM027691.2	=	NC_052178.1	0
Chromosome 3	CM027692.2	=	NC_052179.1	0
Chromosome 4	CM027693.2	=	NC_052180.1	0
Chromosome 5	CM027694.2	=	NC_052181.1	0
Chromosome 6	CM027695.2	=	NC_052182.1	0
Chromosome 7	CM027696.2	=	NC_052183.1	0
Chromosome 8	CM027697.2	=	NC_052184.1	0
Chromosome 9	CM027698.2	=	NC_052185.1	0
Chromosome 10	CM027699.2	=	NC_052186.1	0
Chromosome 11	CM027700.2	=	NC_052187.1	0
Chromosome 12	CM027701.2	=	NC_052188.1	0
Chromosome 13	CM027702.2	=	NC_052189.1	0
Chromosome 14	CM027703.2	=	NC_052190.1	0
Chromosome 15	CM027704.2	=	NC_052191.1	0
Chromosome 16	CM027705.2	=	NC_052192.1	0
Chromosome 17	CM027706.2	=	NC_052193.1	0
Chromosome 18	CM027707.2	=	NC_052194.1	0
Chromosome 19	CM027708.2	=	NC_052195.1	0
Chromosome 20	CM027709.2	=	NC_052196.1	0
Chromosome 21	CM027710.2	=	NC_052197.1	0
Chromosome 22	CM027711.2	=	NC_052198.1	0
Chromosome 23	CM027712.2	=	NC_052199.1	0
Chromosome 24	CM027713.2	=	NC_052200.1	0
Chromosome 25	CM027714.2	=	NC_052201.1	0
Chromosome 26	CM027715.2	=	NC_052202.1	0
Chromosome 27	CM027716.2	=	NC_052203.1	0
Chromosome 28	CM027717.2	=	NC_052204.1	0
Chromosome 29	CM027718.2	=	NC_052205.1	0
Chromosome 30	CM027719.2	=	NC_052206.1	0
Chromosome X	CM027720.2	=	NC_052207.1	0
Chromosome Y	CM027721.2	=	NC_052208.1	0
unplaced	n/a	n/a	n/a	18

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,431,907,375	50	2,428,378,425	98,589,534	1,418
Chromosome 1	119,281,796	1	119,263,044	119,281,796	5
Chromosome 2	238,820,862	1	238,760,561	238,820,862	33
Chromosome 3	183,753,758	1	183,576,736	183,753,758	288
Chromosome 4	92,916,174	1	92,768,225	92,916,174	65
Chromosome 5	112,282,193	1	112,220,026	112,282,193	31
Chromosome 6	93,360,613	1	93,282,979	93,360,613	23
Chromosome 7	123,512,255	1	123,455,673	123,512,255	16
Chromosome 8	104,236,421	1	104,118,562	104,236,421	60
Chromosome 9	64,676,583	1	64,668,083	64,676,583	17
Chromosome 10	90,659,346	1	90,572,838	90,659,346	46
Chromosome 11	85,779,743	1	85,771,310	85,779,743	3
Chromosome 12	106,335,385	1	106,296,436	106,335,385	19
Chromosome 13	64,916,175	1	64,862,994	64,916,175	86
Chromosome 14	47,671,263	1	47,581,422	47,671,263	92
Chromosome 15	50,231,278	1	50,218,719	50,231,278	1
Chromosome 16	50,727,950	1	50,720,172	50,727,950	5
Chromosome 17	47,646,040	1	47,558,287	47,646,040	77
Chromosome 18	33,163,564	1	33,161,539	33,163,564	5
Chromosome 19	26,994,799	1	26,990,799	26,994,799	8
Chromosome 20	100,515,675	1	100,464,406	100,515,675	38
Chromosome 21	98,589,534	1	98,588,534	98,589,534	2
Chromosome 22	38,356,118	1	38,350,450	38,356,118	4
Chromosome 23	47,375,759	1	47,351,631	47,375,759	23
Chromosome 24	46,606,752	1	46,604,752	46,606,752	4
Chromosome 25	47,153,756	1	47,114,960	47,153,756	34
Chromosome 26	28,680,970	1	28,651,898	28,680,970	10
Chromosome 27	32,165,032	1	32,156,332	32,165,032	4
Chromosome 28	63,890,066	1	63,860,066	63,890,066	60
Chromosome 29	37,451,120	1	37,450,120	37,451,120	2
Chromosome 30	30,280,663	1	30,275,800	30,280,663	2
Chromosome X	110,640,000	1	108,544,530	110,640,000	339
Chromosome Y	12,678,898	1	12,559,707	12,678,898	16
unplaced	556,834	18	556,834	30,935	0

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ASM1607732v2

See Genome Information for Equus asinus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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