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Source database (GenBank or RefSeq) File type

ASM31894v1

Organism name:: Chlamydia trachomatis L2b/LST (chlamydias)
Taxonomy check:: OK
Infraspecific name:: Strain: L2b/LST
BioSample:: SAMEA2272379
BioProject:: PRJEA71111
Submitter:: Sanger Institute
Date:: 2012/03/13
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000318945.1 (latest)
RefSeq assembly accession:: GCF_000318945.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 588168 [UID] 505728 [GenBank] 588168 [RefSeq]

See Genome Information for Chlamydia trachomatis

Pathogen Detection Resources

There are 359 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000318945.1	=	GCF_000318945.1	ASM31894v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Data release policy http://www.sanger.ac.uk/legal/#t_2
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::06/11/2023 09:42:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::955
CDSs (total)::909
Genes (coding)::886
CDSs (with protein)::886
Genes (RNA)::46
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::37
ncRNAs::3
Pseudo Genes (total)::23
CDSs (without protein)::23
Pseudo Genes (ambiguous residues)::0 of 23
Pseudo Genes (frameshifted)::17 of 23
Pseudo Genes (incomplete)::5 of 23
Pseudo Genes (internal stop)::2 of 23
Pseudo Genes (multiple problems)::1 of 23
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,046,376
Total ungapped length	1,046,205
Gaps between scaffolds	0
Number of scaffolds	2
Scaffold N50	1,038,876
Scaffold L50	1
Number of contigs	7
Contig N50	279,740
Contig L50	2
Total number of chromosomes and plasmids	2
Number of component sequences (WGS or clone)	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	HE601958.1	=	NC_020975.1
Plasmid pL2bLST	HE603226.1	=	NC_020985.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,046,376	2	1,046,205	1,038,876	5
Chromosome	1,038,876	1	1,038,705	1,038,876	5
Plasmid pL2bLST	7,500	1	7,500	7,500	0

	ANI	Query coverage	Subject coverage
Declared type	99.06	99.85	99.31
Best-match type	99.06	99.85	99.31

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ASM31894v1

See Genome Information for Chlamydia trachomatis

Pathogen Detection Resources

There are 359 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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