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ASM31104v1

Organism name:
Streptococcus agalactiae MRI Z1-209 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: MRI Z1-209
BioSample:
SAMN00993333
BioProject:
PRJNA86405
Submitter:
The J. Craig Venter Institute
Date:
2012/11/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000311045.1 (latest)
RefSeq assembly accession:
GCF_000311045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ANES01
Assembly method:
Celera v. 6.1
Genome coverage:
190.71x
Sequencing technology:
Illumina

IDs: 625888 [UID] 455298 [GenBank] 625888 [RefSeq]

See Genome Information for Streptococcus agalactiae

There are 9829 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/11/2013 12:07:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.0 (rev. 402362)
Features Annotated::Gene; CDS; rRNA; tRNA; repeat_region
Genes::2,142
CDS::2,069
Pseudo Genes::35
rRNAs::6 ( 5S, 16S )
tRNAs::32
Frameshifted Genes::22
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,103,940
Total ungapped length2,103,940
Number of contigs59
Contig N5078,609
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)59

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,103,940592,103,94078,60900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus agalactiae MRI Z1-209Streptococcus agalactiae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900458965.1Streptococcus agalactiaesuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900458965.1Streptococcus agalactiaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0984.5572.66
Best-match type99.0984.5572.66

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna