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Stap_aure_M0306_V1

Organism name:
Staphylococcus aureus M0306 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: M0306
BioSample:
SAMN00809173
BioProject:
PRJNA88951
Submitter:
Broad Institute
Date:
2013/04/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000360705.1 (latest)
RefSeq assembly accession:
GCF_000360705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AJCN01
Assembly method:
allpaths v. R42314
Genome coverage:
164.0x
Sequencing technology:
Illumina

IDs: 659798 [UID] 585538 [GenBank] 659798 [RefSeq]

See Genome Information for Staphylococcus aureus

There are 91157 assemblies for this organism

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History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length2,899,129
Total ungapped length2,891,397
Gaps between scaffolds0
Number of scaffolds2
Scaffold N502,874,006
Scaffold L501
Number of contigs10
Contig N50625,659
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)10

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,899,12922,891,3972,874,00680

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus aureus M0306Staphylococcus aureus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006364675.1Staphylococcus aureustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006364675.1Staphylococcus aureustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9691.4694.89
Best-match type98.9691.4694.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna