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Ente_faec_UAA430_V1

Organism name:
Enterococcus faecium EnGen0315 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UAA430
BioSample:
SAMN00809232
BioProject:
PRJNA88997
Submitter:
Broad Institute
Date:
2013/05/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000394475.1 (latest)
RefSeq assembly accession:
GCF_000394475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AJDI01
Assembly method:
allpaths v. R42179
Genome coverage:
134.0x
Sequencing technology:
Illumina

IDs: 681938 [UID] 681938 [GenBank] 1093358 [RefSeq]

See Genome Information for Enterococcus faecium

There are 23392 assemblies for this organism

See more

History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length2,676,325
Total ungapped length2,655,645
Gaps between scaffolds0
Number of scaffolds16
Scaffold N50457,853
Scaffold L503
Number of contigs38
Contig N50151,205
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)38

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,676,325162,655,645457,853220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faecium EnGen0315Enterococcus faecium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900447735.1Enterococcus faeciumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900447735.1Enterococcus faeciumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3790.9490.55
Best-match type99.3790.9490.55

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna