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IDs: 43208 [UID] 23068 [GenBank] 43208 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4001414 Source DNA and bacteria available from Joel Kostka (jkostka@ocean.fsu.edu) Contacts: Joel Kostka (jkostka@ocean.fsu.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater ... than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Geobacter sp FRC-32 Culture Collection IDs: GOLD ID: Gi00944 http://genomesonline.org/GOLD_CARDS/Gi00944.html Sequencing Platforms: Sanger Sequencing Coverage: 10x Sequencing Status: Draft Phenotypes: Iron reducer, Uranium reducer Diseases: None Habitat: Fresh water, Soil, Sediment Oxygen Requirement: Anaerobe Cell Shape: Rod-shaped Motility: Motile Sporulation: Nonsporulating Energy Source: Chemolithotroph Temperature Range: Mesophile Biotic Relationship: Free living Isolation: Uranium-contaminated subsurface at US The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::01/24/2024 00:50:56Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.6Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::3,853CDSs (total)::3,794Genes (coding)::3,771CDSs (with protein)::3,771Genes (RNA)::59rRNAs::2, 2, 2 (5S, 16S, 23S)complete rRNAs::2, 2, 2 (5S, 16S, 23S)tRNAs::49ncRNAs::4Pseudo Genes (total)::23CDSs (without protein)::23Pseudo Genes (ambiguous residues)::0 of 23Pseudo Genes (frameshifted)::4 of 23Pseudo Genes (incomplete)::19 of 23Pseudo Genes (internal stop)::1 of 23Pseudo Genes (multiple problems)::1 of 23CRISPR Arrays::1##Genome-Annotation-Data-END##
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