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version1

Organism name:
Streptococcus suis YS4 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: YS4
BioSample:
SAMN02469516
BioProject:
PRJNA171468
Submitter:
National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control
Date:
2013/07/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000441335.1 (latest)
RefSeq assembly accession:
GCF_000441335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ALMU01
Assembly method:
Velvet v. 1.2.01
Expected final version:
no
Genome coverage:
460x
Sequencing technology:
Illumina GAIIx

IDs: 46471 [UID] 748508 [GenBank] 1075598 [RefSeq]

See Genome Information for Streptococcus suis

There are 6013 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,109,598
Total ungapped length2,109,598
Number of contigs64
Contig N5065,500
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)64

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,109,598642,109,59865,50000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus suis YS4Streptococcus suis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000294495.1Streptococcus suis S735type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000294495.1Streptococcus suistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.0582.7888.16
Best-match type97.0582.7888.16

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna