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ASM145397v1

Organism name:
Staphylococcus aureus MRSA_CVMN25720PS (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: MRSA_CVMN25720PS
BioSample:
SAMN02404769
BioProject:
PRJNA215415
Submitter:
US Food and Drug Administration, Center for Veterinary Medicine
Date:
2015/11/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001453975.1 (latest)
RefSeq assembly accession:
GCF_001453975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AYXV01
Assembly method:
Newbler v. 2.8
Expected final version:
yes
Genome coverage:
41x
Sequencing technology:
454

IDs: 588471 [UID] 2700128 [GenBank] 2709688 [RefSeq]

See Genome Information for Staphylococcus aureus

There are 90968 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from CVM/DAFM, FDA, 8401 Muirkirk Road, Laurel, MD 20708, USA
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::11/25/2013 15:19:59
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::2.3 (rev. 418893)
Genes::2,623
CDS::2,546
Pseudo Genes::12
rRNAs::6 (5S, 16S, 23S)
tRNAs::58
ncRNA::1
Frameshifted Genes::8
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,736,474
Total ungapped length2,736,474
Number of contigs32
Contig N50226,066
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)32

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,736,474322,736,474226,06600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus aureus MRSA_CVMN25720PSStaphylococcus aureus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006364675.1Staphylococcus aureustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006364675.1Staphylococcus aureustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9595.0493.31
Best-match type98.9595.0493.31

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna