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Source database (GenBank or RefSeq) File type

TH985VE

Organism name:: Streptococcus thermophilus TH985 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: TH985
BioSample:: SAMN02442656
BioProject:: PRJNA231300
Submitter:: University of Padua
Date:: 2015/02/18
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000836675.1 (latest)
RefSeq assembly accession:: GCF_000836675.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: AZTM01
Assembly method:: Velvet v. 1.2.10; ABySS v. 1.3.5
Genome coverage:: 183.0x
Sequencing technology:: Illumina MiSeq

IDs: 272681 [UID] 1580588 [GenBank] 4382968 [RefSeq]

See Genome Information for Streptococcus thermophilus

Pathogen Detection Resources

There are 543 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000836675.1	=	GCF_000836675.1	TH985VE	Chromosome	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria available from Veneto Agricoltura, Istituto per la Qualita e le Tecnologie Agroalimentari, Thiene (VI), Italy. Source DNA available ... from Alessio Giacomini, DAFNAE, University of Padua, Viale dell'Universita, 16, Legnaro (PD) Italy.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::12/30/2013 12:28:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.3 (rev. 422554)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::2,077
CDS::1,921
Pseudo Genes::94
CRISPR Arrays::3
rRNAs::10 ( 5S, 16S, 23S )
tRNAs::51
ncRNA::1
Frameshifted Genes::67
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,844,433
Total ungapped length	1,833,599
Gaps between scaffolds	70
Number of scaffolds	84
Scaffold N50	49,128
Scaffold L50	12
Number of contigs	94
Contig N50	45,156
Contig L50	13
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	94

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome	CM003139.1	=	NZ_CM003139.1	0
unplaced	n/a	n/a	n/a	14

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	1,844,433	84	1,833,599	49,128	10	70
Chromosome	1,789,956	70	1,779,980	49,528	7	70
unplaced	54,477	14	53,619	4,270	3	0

	ANI	Query coverage	Subject coverage
Declared type	98.73	89.67	78.20
Best-match type	98.73	89.67	78.20

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TH985VE

See Genome Information for Streptococcus thermophilus

Pathogen Detection Resources

There are 543 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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