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IDs: 15790501 [UID] 40531938 [GenBank]
The annotation was added by the assembly submitters using the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about stand-alone PGAP can be found here: https://github.com/ncbi/pgap/ This draft WGS assembly was generated by running SKESA to generate a de-novo assembly. The ... de-novo assembly was then concatenated with contigs generated using a guided assembler using antimicrobial resistance genes as baits to comprehensively catalog the set of resistance genes in the isolate. Note, some parts of the contigs derived from the guided assembler may overlap de-novo contigs, and other guided assembler contigs. De-novo contigs can be differentiated from guided assembler contigs by their names , which include either 'denovo' or 'guided'. more
##Genome-Annotation-Data-START##Annotation Date::02/03/2023 22:56:19Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Provider::NCBIFeatures Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_regionAnnotation Software revision::2021-01-11.build5132Genes (total)::2,860CDSs (total)::2,793Genes (coding)::2,713CDSs (with protein)::2,713Genes (RNA)::67rRNAs::2, 3, 4 (5S, 16S, 23S)complete rRNAs::2 (5S)partial rRNAs::3, 4 (16S, 23S)tRNAs::54ncRNAs::4Pseudo Genes (total)::80CDSs (without protein)::80Pseudo Genes (ambiguous residues)::0 of 80Pseudo Genes (frameshifted)::50 of 80Pseudo Genes (incomplete)::29 of 80Pseudo Genes (internal stop)::25 of 80Pseudo Genes (multiple problems)::20 of 80##Genome-Annotation-Data-END##
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