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ASM165301v1

Organism name:
Rickettsia sp. Tenjiku01 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Tenjiku01
BioSample:
SAMD00043251
BioProject:
PRJDB4357
Submitter:
Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases
Date:
2016/02/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001653015.1 (latest)
RefSeq assembly accession:
GCF_001653015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BCMR01
Assembly method:
CLC De Novo Assembler v. 6.5
Genome coverage:
40x
Sequencing technology:
Illumina MiSeq

IDs: 750581 [UID] 3277378 [GenBank] 3280258 [RefSeq]

See Genome Information for Rickettsia sp. Tenjiku01

History (Show revision history)

Comment

Global statistics

Total sequence length1,256,207
Total ungapped length1,256,207
Number of contigs32
Contig N5058,855
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)32

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,256,207321,256,20758,85500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rickettsia sp. Tenjiku01Rickettsia sp. Tenjiku01

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000237845.1Rickettsia slovacasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.2998.2796.81

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna