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ASM165031v1

Organism name:
Streptococcus sp. CCUG 49591 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CCUG 49591
BioSample:
SAMN04575401
BioProject:
PRJNA302716
Submitter:
TAILORED-Treatment project
Date:
2016/05/24
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001650315.1 (latest)
RefSeq assembly accession:
GCF_001650315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LVJM01
Assembly method:
CLC NGS Cell v. 8.0
Expected final version:
yes
Genome coverage:
110.0x
Sequencing technology:
Illumina MiSeq

IDs: 749001 [UID] 3269868 [GenBank] 3275538 [RefSeq]

See Genome Information for Streptococcus sp. CCUG 49591

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/23/2016 13:37:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,920
CDS (total)::1,869
Genes (coding)::1,777
CDS (coding)::1,777
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::92
Pseudo Genes (ambiguous residues)::0 of 92
Pseudo Genes (frameshifted)::23 of 92
Pseudo Genes (incomplete)::67 of 92
Pseudo Genes (internal stop)::10 of 92
Pseudo Genes (multiple problems)::8 of 92
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,928,655
Total ungapped length1,927,796
Gaps between scaffolds0
Number of scaffolds49
Scaffold N50150,805
Scaffold L504
Number of contigs54
Contig N50128,941
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,928,655491,927,796150,80550

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus sp. CCUG 49591Streptococcus sp. CCUG 49591

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000148585.3Streptococcus mitissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.4578.4880.95

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna