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ASM256650v1

Organism name:
Bacillus sp. AFS077874 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AFS077874
BioSample:
SAMN07598441
BioProject:
PRJNA400804
Submitter:
UNC Chapel Hill
Date:
2017/10/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002566505.1 (latest)
RefSeq assembly accession:
GCF_002566505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NUYF01
Assembly method:
CLC Assembly Cell v. 4.2.179
Expected final version:
yes
Genome coverage:
63.11x
Sequencing technology:
Illumina HiSeq

IDs: 1336001 [UID] 5384028 [GenBank] 5424768 [RefSeq]

See Genome Information for Bacillus sp. AFS077874

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/17/2017 15:31:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,820
CDS (total)::4,741
Genes (coding)::4,632
CDS (coding)::4,632
Genes (RNA)::79
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::72
ncRNAs::4
Pseudo Genes (total)::109
Pseudo Genes (ambiguous residues)::0 of 109
Pseudo Genes (frameshifted)::46 of 109
Pseudo Genes (incomplete)::54 of 109
Pseudo Genes (internal stop)::29 of 109
Pseudo Genes (multiple problems)::17 of 109
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,055,293
Total ungapped length5,055,003
Gaps between scaffolds0
Number of scaffolds61
Scaffold N50250,872
Scaffold L506
Number of contigs71
Contig N50165,930
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,055,293615,055,003250,872100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus sp. AFS077874Bacillus sp. AFS077874

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002128425.1Gottfriedia acidicelerissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.3874.8679.31

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna