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ASM385703v1

Organism name:
Micromonospora arida (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LB32
BioSample:
SAMN09254037
BioProject:
PRJNA472945
Submitter:
Newcastle University
Date:
2018/12/03
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003857035.1 (latest)
RefSeq assembly accession:
GCF_003857035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QGSY01
Assembly method:
SPAdes v. FEB-2016
Expected final version:
yes
Genome coverage:
31.0x
Sequencing technology:
Illumina MiSeq

IDs: 2127901 [UID] 7978678 [GenBank] 7989638 [RefSeq]

See Genome Information for Micromonospora arida

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Lorena Carro.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/24/2018 23:53:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,739
CDS (total)::6,681
Genes (coding)::6,489
CDS (coding)::6,489
Genes (RNA)::58
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::192
Pseudo Genes (ambiguous residues)::0 of 192
Pseudo Genes (frameshifted)::35 of 192
Pseudo Genes (incomplete)::170 of 192
Pseudo Genes (internal stop)::6 of 192
Pseudo Genes (multiple problems)::18 of 192
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,149,450
Total ungapped length7,149,450
Number of contigs345
Contig N5037,596
Contig L5059
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)345

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,149,4503457,149,45037,59600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Micromonospora aridaMicromonospora arida

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900091575.1Micromonospora saelicesensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.4384.4284.97

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected