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ASM1488499v1

Organism name:
Spirabiliibacterium pneumoniae (Bisgaard Taxon 32)
Taxonomy check:
OK
Infraspecific name:
Strain: HPA106
BioSample:
SAMN14941437
BioProject:
PRJNA633329
Submitter:
University of Copenhagen
Date:
2020/10/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_014884995.1 (latest)
RefSeq assembly accession:
GCF_014884995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JABMII01
Assembly method:
CLC NGS Cell v. 7
Expected final version:
yes
Genome coverage:
250.0x
Sequencing technology:
Illumina HiSeq

IDs: 8245101 [UID] 22519768 [GenBank] 25793038 [RefSeq]

See Genome Information for Spirabiliibacterium pneumoniae

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Henrik Christensen, Dept. Vet. Animal Sciences, University of Copenhagen, Denmark

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/22/2020 19:30:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,078
CDSs (total)::2,020
Genes (coding)::2,008
CDSs (with protein)::2,008
Genes (RNA)::58
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::12
CDSs (without protein)::12
Pseudo Genes (ambiguous residues)::0 of 12
Pseudo Genes (frameshifted)::6 of 12
Pseudo Genes (incomplete)::6 of 12
Pseudo Genes (internal stop)::3 of 12
Pseudo Genes (multiple problems)::3 of 12
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,091,610
Total ungapped length2,091,610
Number of contigs25
Contig N50219,366
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,091,610252,091,610219,36600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Spirabiliibacterium pneumoniaeSpirabiliibacterium pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014884965.1Spirabiliibacterium mucosaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.4879.8077.59

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected