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ASM381244v1

Organism name:
Streptococcus sp. FDAARGOS_522 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_522
BioSample:
SAMN10163216
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2018/11/21
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003812445.1 (latest)
RefSeq assembly accession:
GCF_003812445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.2
Genome coverage:
2651.72255761905x
Sequencing technology:
PacBio; Illumina

IDs: 2113121 [UID] 7901998 [GenBank] 7935358 [RefSeq]

See Genome Information for Streptococcus sp. FDAARGOS_522

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/14/2023 03:08:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,134
CDSs (total)::2,030
Genes (coding)::1,966
CDSs (with protein)::1,966
Genes (RNA)::104
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::80
ncRNAs::3
Pseudo Genes (total)::64
CDSs (without protein)::64
Pseudo Genes (ambiguous residues)::0 of 64
Pseudo Genes (frameshifted)::37 of 64
Pseudo Genes (incomplete)::24 of 64
Pseudo Genes (internal stop)::23 of 64
Pseudo Genes (multiple problems)::16 of 64
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,101,126
Total ungapped length2,101,126
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003812455.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP033808.1=NZ_CP033808.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,101,126

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus sp. FDAARGOS_522Streptococcus sp. FDAARGOS_522

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900458965.1Streptococcus agalactiaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.0986.0173.81

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna