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ASM1547654v1

Organism name:
Methylobacter sp. BlB1 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BlB1
BioSample:
SAMN16707684
BioProject:
PRJNA675424
Submitter:
MACS Agharkar Research Institute
Date:
2020/11/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_015476545.1 (latest)
RefSeq assembly accession:
GCF_015476545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADMKV01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
900.0x
Sequencing technology:
Illumina HiSeq

IDs: 8544901 [UID] 23191858 [GenBank] 23230968 [RefSeq]

See Genome Information for Methylobacter sp. BlB1

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Dr. Monali C. Rahalkar Agharkar Research Institute, Pune

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/10/2020 21:25:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,430
CDSs (total)::4,385
Genes (coding)::4,319
CDSs (with protein)::4,319
Genes (RNA)::45
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::38
ncRNAs::4
Pseudo Genes (total)::66
CDSs (without protein)::66
Pseudo Genes (ambiguous residues)::0 of 66
Pseudo Genes (frameshifted)::34 of 66
Pseudo Genes (incomplete)::33 of 66
Pseudo Genes (internal stop)::13 of 66
Pseudo Genes (multiple problems)::14 of 66
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,865,836
Total ungapped length4,865,424
Gaps between scaffolds0
Number of scaffolds227
Scaffold N5059,038
Scaffold L5025
Number of contigs240
Contig N5050,157
Contig L5028
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)227

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,865,8362274,865,42459,038130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylobacter sp. BlB1Methylobacter sp. BlB1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000383855.1Methylobacter marinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.1147.9546.77

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna