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ASM9098v2

Organism name:
Micromonas commoda (green algae)
Infraspecific name:
Strain: RCC299
BioSample:
SAMN03081421
BioProject:
PRJNA15676
Submitter:
Micromonas genome consortium
Date:
2009/04/10
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000090985.2 (latest)
RefSeq assembly accession:
GCF_000090985.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 95681 [UID] 899448 [GenBank] 899468 [RefSeq]

See Genome Information for Micromonas commoda

There are 25 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov/MicromonasRCC299
JGI Project ID: 4000189
Organism available from the Center for Culture of Marine Phytoplankton (CCMP) and the Roscoff Culture collection (RCC)
Contacts: Alexandra Z. Worden (azworden@mbari.org)
 Igor Grigoriev (IVGrigoriev@lbl.gov)
Annotation done by the Micromonas genome consortium as identified in the ... authorship as listed as reference 1 above.
This organism was isolated from South Pacific surface waters in 1998 by S.Boulben. This strain was rendered clonal and axenic in the Worden Lab through plating and a series of antibiotic treatments. Subsequently, the axenic strain was deposited at the CCMP (CCMP2709) and RCC (RCC827). RCC299 is also referred to as strain NOUM17.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. We welcome collaborative interaction on the project.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::INSDC submitter
Annotation Status::Full annotation
Annotation Pipeline::Eukaryotic Annotation Propagation Pipeline
##Genome-Annotation-Data-END##

Global statistics

Total sequence length21,109,336
Total ungapped length21,109,336
Total number of chromosomes and plasmids19

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000090995.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP001574.1=NC_013038.1
Chromosome 2CP001323.1=NC_013039.1
Chromosome 3CP001324.1=NC_013040.1
Chromosome 4CP001325.1=NC_013041.1
Chromosome 5CP001326.1=NC_013042.1
Chromosome 6CP001327.1=NC_013043.1
Chromosome 7CP001328.1=NC_013044.1
Chromosome 8CP001575.1=NC_013045.1
Chromosome 9CP001329.1=NC_013046.1
Chromosome 10CP001576.1=NC_013047.1
Chromosome 11CP001330.1=NC_013048.1
Chromosome 12CP001577.1=NC_013049.1
Chromosome 13CP001331.1=NC_013050.1
Chromosome 14CP001332.1=NC_013051.1
Chromosome 15CP001333.1=NC_013052.1
Chromosome 16CP001334.1=NC_013053.1
Chromosome 17CP001335.1=NC_013054.1

Assembly statistics

MoleculeTotal
Length
All20,989,326
Chromosome 12,053,059
Chromosome 21,914,325
Chromosome 31,759,951
Chromosome 41,584,431
Chromosome 51,518,631
Chromosome 61,431,126
Chromosome 71,394,110
Chromosome 81,276,107
Chromosome 91,260,462
Chromosome 101,160,640
Chromosome 111,145,873
Chromosome 121,084,119
Chromosome 131,011,177
Chromosome 14832,468
Chromosome 15739,136
Chromosome 16608,929
Chromosome 17214,782
MoleculeTotal
Length
All120,010
Mitochondrion MT47,425
Chloroplast Pltd72,585