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ASM16803v1

Organism name:
Yersinia intermedia ATCC 29909 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 29909
BioSample:
SAMN00005354
BioProject:
PRJNA16107
Submitter:
Naval Medical Research Center
Date:
2009/06/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000168035.1 (latest)
RefSeq assembly accession:
GCF_000168035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AALF02
Assembly method:
Unknown v. before 2010
Genome coverage:
38.7x
Sequencing technology:
Unknown

IDs: 204618 [UID] 204598 [GenBank] 204618 [RefSeq]

See Genome Information for Yersinia intermedia

There are 46 assemblies for this organism

See more

History (Show revision history)

Comment

Genome coverage: 38.7X

Global statistics

Total sequence length4,711,317
Total ungapped length4,711,317
Number of contigs123
Contig N50123,751
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)123

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,711,3171234,711,317123,75100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia intermedia ATCC 29909Yersinia intermedia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900635455.1Yersinia intermediatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900635455.1Yersinia intermediatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.5798.60
Best-match type99.9999.5798.60

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna