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IMG-taxon 2617270908 annotated assembly

Organism name:
Methylorubrum salsuginis (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.6474
BioSample:
SAMN04488125
BioProject:
PRJEB17431
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900114375.1 (latest)
RefSeq assembly accession:
GCF_900114375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOSV01
Genome coverage:
144x

IDs: 882601 [UID] 3704948 [GenBank] 4882108 [RefSeq]

See Genome Information for Methylorubrum salsuginis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length5,323,773
Total ungapped length5,322,408
Gaps between scaffolds0
Number of scaffolds64
Scaffold N50174,813
Scaffold L509
Number of contigs68
Contig N50167,484
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)64

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,323,773645,322,408174,81340

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylorubrum salsuginisMethylorubrum salsuginis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014199935.1Methylorubrum rhodinumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.9570.4769.38

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected