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URL -- http://www.jgi.doe.gov
JGI Project ID: 4083016
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
 David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done ... by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/02/2023 01:39:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,362
CDSs (total)::4,305
Genes (coding)::4,230
CDSs (with protein)::4,230
Genes (RNA)::57
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::75
CDSs (without protein)::75
Pseudo Genes (ambiguous residues)::0 of 75
Pseudo Genes (frameshifted)::14 of 75
Pseudo Genes (incomplete)::55 of 75
Pseudo Genes (internal stop)::7 of 75
Pseudo Genes (multiple problems)::1 of 75
##Genome-Annotation-Data-END##

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