txid59729[Organism] - Assembly

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Taxonomy

Taeniopygia guttata

Zebra finch (Taeniopygia guttata) is a species of bird in the family Estrildidae.

Taxonomy ID: 59729

Genomes Genes Genome Data Viewer

Search results

Items: 15

Filters activated: Latest, Exclude anomalous. Clear all to show 25 items.

Select item 100053611.

bTaeGut1.4.pri

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: Vertebrate Genomes Project

Date:: 2021/05/04

Assembly type:: haploid (principal pseudohaplotype of diploid)

Assembly level:: Chromosome

Genome representation:: full

RefSeq category:: representative genome

GenBank assembly accession:: GCA_003957565.4 (latest)

RefSeq assembly accession:: GCF_003957565.2 (latest)

IDs:: 10005361 [UID] 26615478 [GenBank] 26711698 [RefSeq]

Select item 59665512.

bTaeGut2.mat.v3

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: Vertebrate Genomes Project

Date:: 2020/02/21

Assembly type:: haploid (maternal haplotype of diploid)

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_008822115.3 (latest)

RefSeq assembly accession:: n/a

IDs:: 5966551 [UID] 17077798 [GenBank]

Select item 47811413.

bTaeGut2pat

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: Vertebrate Genomes Project

Date:: 2019/10/03

Assembly type:: haploid (paternal haplotype of diploid)

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_008822125.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 4781141 [UID] 14231518 [GenBank]

Select item 64910914.

bTaeGut2.pri.v2

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: Vertebrate Genomes Project

Date:: 2020/04/01

Assembly type:: haploid (principal pseudohaplotype of diploid)

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_009859065.2 (latest)

RefSeq assembly accession:: n/a

IDs:: 6491091 [UID] 18204948 [GenBank]

Select item 10220815.

Tgut_diploid_1.0

Organism:: Taeniopygia guttata (zebra finch)

Sex:: male

Submitter:: Pacific Biosciences

Date:: 2017/02/28

Assembly type:: haploid-with-alt-loci

Assembly level:: Contig

Genome representation:: full

GenBank assembly accession:: GCA_002008985.2 (latest)

RefSeq assembly accession:: n/a

Release type:: Minor

IDs:: 1022081 [UID] 4187728 [GenBank]

Select item 99368216.

bTaeGut1.4.alt

Organism:: Taeniopygia guttata (zebra finch)

Sex:: male

Submitter:: Vertebrate Genomes Project

Date:: 2021/04/28

Assembly type:: alternate-pseudohaplotype (alternate pseudohaplotype of diploid)

Assembly level:: Scaffold

Genome representation:: full

GenBank assembly accession:: GCA_003957525.2 (latest)

RefSeq assembly accession:: n/a

IDs:: 9936821 [UID] 26486008 [GenBank]

Select item 66079617.

zebrafinch.phase1_scaffolds

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: PacBio

Date:: 2020/04/06

Assembly type:: alternate-pseudohaplotype (alternate pseudohaplotype of diploid)

Assembly level:: Scaffold

Genome representation:: full

GenBank assembly accession:: GCA_012069595.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 6607961 [UID] 18439098 [GenBank]

Select item 66082318.

zebrafinch.phase1_contigs

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: PacBio

Date:: 2020/04/06

Assembly type:: alternate-pseudohaplotype (alternate pseudohaplotype of diploid)

Assembly level:: Contig

Genome representation:: full

GenBank assembly accession:: GCA_012069575.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 6608231 [UID] 18439198 [GenBank]

Select item 66083719.

zebrafinch.phase0_contigs

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: PacBio

Date:: 2020/04/06

Assembly type:: haploid (principal pseudohaplotype of diploid)

Assembly level:: Contig

Genome representation:: full

GenBank assembly accession:: GCA_012069615.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 6608371 [UID] 18439258 [GenBank]

Select item 660816110.

zebrafinch.Unzip_purge_primary

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: PacBio

Date:: 2020/04/06

Assembly type:: haploid (principal pseudohaplotype of diploid)

Assembly level:: Contig

Genome representation:: full

GenBank assembly accession:: GCA_012069585.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 6608161 [UID] 18439188 [GenBank]

Select item 660798111.

zebrafinch.phase0_scaffolds

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: PacBio

Date:: 2020/04/06

Assembly type:: haploid (principal pseudohaplotype of diploid)

Assembly level:: Scaffold

Genome representation:: full

GenBank assembly accession:: GCA_012069605.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 6607981 [UID] 18439118 [GenBank]

Select item 545475112.

bTaeGut2.p.v1.alt

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: Vertebrate Genomes Project

Date:: 2020/01/13

Assembly type:: alternate-pseudohaplotype (alternate pseudohaplotype of diploid)

Assembly level:: Scaffold

Genome representation:: full

GenBank assembly accession:: GCA_009859025.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 5454751 [UID] 15778978 [GenBank]

Select item 661825113.

zebrafinch.Unzip_purge_haplotigs

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: PacBio

Date:: 2020/04/06

Assembly type:: alternate-pseudohaplotype (alternate pseudohaplotype of diploid)

Assembly level:: Contig

Genome representation:: full

GenBank assembly accession:: GCA_012069535.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 6618251 [UID] 18439058 [GenBank]

Select item 596671114.

bTaeGut2.pat.W.v2

Organism:: Taeniopygia guttata (zebra finch)

Sex:: female

Submitter:: Vertebrate Genomes Project

Date:: 2020/02/12

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_008822105.2 (latest)

RefSeq assembly accession:: GCF_008822105.2 (suppressed)

Excluded from RefSeq:: superseded by newer assembly for species

IDs:: 5966711 [UID] 17077808 [GenBank] 17341008 [RefSeq]

Select item 52490815.

Taeniopygia_guttata-3.2.4

Organism:: Taeniopygia guttata (zebra finch)

Sex:: male

Submitter:: Washington University Genome Sequencing Center

Date:: 2013/02/08

Assembly level:: Chromosome

Genome representation:: full

Synonyms:: taeGut1

GenBank assembly accession:: GCA_000151805.2 (latest)

RefSeq assembly accession:: GCF_000151805.1 (suppressed)

Excluded from RefSeq:: superseded by newer assembly for species

IDs:: 524908 [UID] 538328 [GenBank] 524908 [RefSeq]

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