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Source database (GenBank or RefSeq) File type

PolPal_Dec2009

Organism name:: Heterostelium album PN500 (cellular slime molds)
Infraspecific name:: Strain: PN500
BioSample:: SAMN02953767
BioProject:: PRJNA40191
Submitter:: Leibniz Institute for Age Research - Fritz Lipmann Institute
Date:: 2010/01/29
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000004825.1 (latest)
RefSeq assembly accession:: GCF_000004825.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: ADBJ01
Genome coverage:: 20x

IDs: 316748 [UID] 316748 [GenBank] 4228168 [RefSeq]

See Genome Information for Heterostelium album

Pathogen Detection Resources

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Comment

The complete plasmid PN500 was deposited in GenBank Accession Number CP001838
Genome Coverage: 20x
Sequencing Technology: 454

Global statistics

Total sequence length	32,970,186
Total ungapped length	32,968,086
Gaps between scaffolds	0
Number of scaffolds	43
Scaffold N50	1,505,626
Scaffold L50	8
Number of contigs	64
Contig N50	1,220,979
Contig L50	10
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	64

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Assembly Information

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PubMed articles for this assembly

Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication.
Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication.
Heidel AJ, Lawal HM, Felder M, Schilde C, Helps NR...

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PolPal_Dec2009 - Genome - Assembly - NCBI
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Assembly

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Assembly Definition
Assembly Statistics

Global assembly definition

Download the full sequence report

Assembly Unit: Primary Assembly (GCF_000004835.1)

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Plasmid PPN500	CP001838.1	=	NC_013781.1	0
unplaced	n/a	n/a	n/a	42

Assembly statistics

Primary Assembly

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	32,970,186	43	32,968,086	1,505,626	21	0
Plasmid PPN500	27,653	1	27,653	27,653	0	0
unplaced	32,942,533	42	32,940,433	1,505,626	21	0