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ASM33995v1

Organism name:
Streptococcus mutans N3209 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: N3209
BioSample:
SAMN02429077
BioProject:
PRJNA49813
Submitter:
Cornell University
Date:
2013/02/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000339955.1 (latest)
RefSeq assembly accession:
GCF_000339955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AHSL01
Assembly method:
Velvet v. 0.7.55
Genome coverage:
50x
Sequencing technology:
Illumina GAII single end reads

IDs: 546058 [UID] 539398 [GenBank] 546058 [RefSeq]

See Genome Information for Streptococcus mutans

There are 478 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length1,953,403
Total ungapped length1,953,403
Number of contigs113
Contig N5048,899
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)113

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,953,4031131,953,40348,89900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus mutans N3209Streptococcus mutans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000347875.1Streptococcus mutans ATCC 25175type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000347875.1Streptococcus mutanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3296.2394.00
Best-match type99.3296.2394.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna