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IDs: 521078 [UID] 517318 [GenBank] 521078 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4086496 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done ... by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::05/03/2023 00:59:23Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.5Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::2,694CDSs (total)::2,634Genes (coding)::2,587CDSs (with protein)::2,587Genes (RNA)::60rRNAs::2, 2, 2 (5S, 16S, 23S)complete rRNAs::2, 2, 2 (5S, 16S, 23S)tRNAs::52ncRNAs::2Pseudo Genes (total)::47CDSs (without protein)::47Pseudo Genes (ambiguous residues)::0 of 47Pseudo Genes (frameshifted)::19 of 47Pseudo Genes (incomplete)::28 of 47Pseudo Genes (internal stop)::12 of 47Pseudo Genes (multiple problems)::10 of 47CRISPR Arrays::2##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Methanomethylovorans hollandica DSM 15978collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::Missingenvironment::Fresh water, Fresh water, Sedimentnum_replicons::2ref_biomaterial::DSM 15978biotic_relationship::Free livingtrophic_level::Methylotrophrel_to_oxygen::Obligate anaerobeisol_growth_condt::10427061sequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi02921Type Strain::YesGreengenes ID::431Funding Program::DOE-GEBA 2007Gene Calling Method::Prodigal, GenePRIMPIsolation Site::Anaerobic top layer (5 to 10 cm) of sediment (depth, 50 cm) in a eutrophic freshwater pond at the Dekkerswald Institute, Nijmegen, The NetherlandsCell Shape::Disc-shapedMotility::NonmotileTemperature Range::MesophileTemperature Optimum::37CpH::6.5 - 7.0Gram Staining::Gram-Diseases::None##MIGS-Data-END##
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