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ASM27014v1

Organism name:
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 43143
BioSample:
SAMD00060983
BioProject:
PRJDA62517
Submitter:
Yang-Ming Genome Sequencing Center, National Yang-Ming University
Date:
2011/05/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000270145.1 (latest)
RefSeq assembly accession:
GCF_000270145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 1.1.03.24
Genome coverage:
122X
Sequencing technology:
454 GS 20; Illumina GA II; ABI 3730xl

IDs: 392178 [UID] 389118 [GenBank] 392178 [RefSeq]

See Genome Information for Streptococcus gallolyticus

There are 71 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/12/2023 11:44:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,354
CDSs (total)::2,275
Genes (coding)::2,246
CDSs (with protein)::2,246
Genes (RNA)::79
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::29
CDSs (without protein)::29
Pseudo Genes (ambiguous residues)::0 of 29
Pseudo Genes (frameshifted)::20 of 29
Pseudo Genes (incomplete)::5 of 29
Pseudo Genes (internal stop)::9 of 29
Pseudo Genes (multiple problems)::5 of 29
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,362,241
Total ungapped length2,362,241
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000270155.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP012053.1=NC_017576.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,362,241

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143Streptococcus gallolyticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475715.1Streptococcus gallolyticussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475715.1Streptococcus gallolyticussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9087.2382.63
Best-match type98.9087.2382.63

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna