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GRCh37

Description:
Genome Reference Consortium Human Build 37 (GRCh37)
Organism name:
Homo sapiens (human)
BioProject:
PRJNA31257
Submitter:
Genome Reference Consortium
Date:
2009/02/27
Synonyms:
hg19
Assembly type:
haploid-with-alt-loci
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000001405.1 (replaced)
RefSeq assembly accession:
GCF_000001405.13 (replaced)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 2758 [UID] 2468 [GenBank] 2758 [RefSeq]

See Genome Information for Homo sapiens

Pathogen Detection Resources

There are 1094 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Status::Full annotation
Annotation Version::Homo sapiens Annotation Release 105
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::5.1
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics*

Number of regions with alternate loci or patches7
Total sequence length3,101,788,170
Total ungapped length2,867,437,753
Gaps between scaffolds271
Number of scaffolds249
Scaffold N5046,395,641
Scaffold L5021
Number of contigs350
Contig N5038,508,932
Contig L5024
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)27,054

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
ALT_REF_LOCI_1
ALT_REF_LOCI_2
ALT_REF_LOCI_3
ALT_REF_LOCI_4
ALT_REF_LOCI_5
ALT_REF_LOCI_6
ALT_REF_LOCI_7
ALT_REF_LOCI_8
ALT_REF_LOCI_9

Regions

NameLocation
UGT2B174:69170077-69878175
MHC6:28477797-33448354
MAPT17:43384864-44913631
PAR#1X:60001-2699520
PAR#2X:154931044-155260560
PAR#1Y:10001-2649520
PAR#2Y:59034050-59363566
Assembly Unit: Primary Assembly (GCF_000001305.13)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000663.1=NC_000001.102
Chromosome 2CM000664.1=NC_000002.110
Chromosome 3CM000665.1=NC_000003.110
Chromosome 4CM000666.1=NC_000004.112
Chromosome 5CM000667.1=NC_000005.90
Chromosome 6CM000668.1=NC_000006.110
Chromosome 7CM000669.1=NC_000007.131
Chromosome 8CM000670.1=NC_000008.102
Chromosome 9CM000671.1=NC_000009.114
Chromosome 10CM000672.1=NC_000010.100
Chromosome 11CM000673.1=NC_000011.91
Chromosome 12CM000674.1=NC_000012.110
Chromosome 13CM000675.1=NC_000013.100
Chromosome 14CM000676.1=NC_000014.80
Chromosome 15CM000677.1=NC_000015.90
Chromosome 16CM000678.1=NC_000016.90
Chromosome 17CM000679.1=NC_000017.104
Chromosome 18CM000680.1=NC_000018.91
Chromosome 19CM000681.1=NC_000019.92
Chromosome 20CM000682.1=NC_000020.100
Chromosome 21CM000683.1=NC_000021.81
Chromosome 22CM000684.1=NC_000022.100
Chromosome XCM000685.1=NC_000023.100
Chromosome YCM000686.1=NC_000024.90
unplacedn/an/an/a39

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule3,101,788,1702492,867,437,75346,395,641101271
Chromosome 1AllAssembled moleculeUnlocalized scaffolds249,904,550249,250,621653,92921192225,934,550225,280,621653,92957,411,34957,411,349547,4961919022220
Chromosome 2Assembled molecule243,199,37313238,204,52268,452,323615
Chromosome 3Assembled molecule198,022,4304194,797,140100,537,10707
Chromosome 4AllAssembled moleculeUnlocalized scaffolds191,535,534191,154,276381,25812102188,042,934187,661,676381,258115,591,997115,591,997191,46911012120
Chromosome 5Assembled molecule180,915,2605177,695,26046,395,64116
Chromosome 6Assembled molecule171,115,0673167,395,06758,720,16668
Chromosome 7AllAssembled moleculeUnlocalized scaffolds159,321,559159,138,663182,896871155,536,559155,353,663182,89650,360,63150,360,631182,896990880
Chromosome 8AllAssembled moleculeUnlocalized scaffolds146,440,111146,364,02276,089972142,964,911142,888,92275,98938,440,85238,440,85238,914211990
Chromosome 9AllAssembled moleculeUnlocalized scaffolds141,696,573141,213,431483,14228244120,626,573120,143,431483,14262,237,59262,237,592169,8741515029290
Chromosome 10Assembled molecule135,534,7478131,314,74779,420,533812
Chromosome 11AllAssembled moleculeUnlocalized scaffolds135,046,619135,006,51640,103541131,169,619131,129,51640,10341,593,37941,593,37940,10344011110
Chromosome 12Assembled molecule133,851,8956130,481,39571,516,77648
Chromosome 13Assembled molecule115,169,878595,589,87867,740,324010
Chromosome 14Assembled molecule107,349,540188,289,54088,289,54005
Chromosome 15Assembled molecule102,531,392781,694,76953,620,202210
Chromosome 16Assembled molecule90,354,753478,884,75342,003,582110
Chromosome 17AllAssembled moleculeUnlocalized scaffolds81,529,60781,195,210334,397106478,129,60777,795,210334,39744,983,20144,983,201174,588220550
Chromosome 18AllAssembled moleculeUnlocalized scaffolds78,081,51078,077,2484,26243174,661,51074,657,2484,26225,808,11225,808,1124,262220770
Chromosome 19AllAssembled moleculeUnlocalized scaffolds59,380,84159,128,983251,85864256,060,84155,808,983251,85831,387,20131,387,201159,169110880
Chromosome 20Assembled molecule63,025,520459,505,52031,409,46129
Chromosome 21AllAssembled moleculeUnlocalized scaffolds48,157,57748,129,89527,68298135,134,22435,106,64227,58228,617,43028,617,43027,68298114140
Chromosome 22Assembled molecule51,304,566434,894,56629,755,34609
Chromosome XAssembled molecule155,270,56017151,100,56027,775,034521
Chromosome YAssembled molecule59,373,5661725,653,5666,265,435216
unplacedAssembled molecule3,675,142393,675,142164,23900
Region
Name		LocationScaffold
Count		Total
Length		Ungapped
Length		Scaffold
N50		Spanned
Gaps
UGT2B174:69170077-698781751590,426590,426590,4260
MHC6:28477797-33448354733,085,26927,684,9484,683,26398
MAPT17:43384864-4491363111,680,8281,580,8281,680,8282
Unit NameScaffold
Count		Total
Length		Ungapped
Length		Scaffold
N50		Spanned
Gaps
ALT_REF_LOCI_114,622,2902,320,7474,622,29028
ALT_REF_LOCI_214,795,3714,795,3714,795,3710
ALT_REF_LOCI_314,610,3964,204,3024,610,39610
ALT_REF_LOCI_414,683,2634,100,7414,683,26316
ALT_REF_LOCI_514,833,3983,794,9114,833,39822
ALT_REF_LOCI_614,611,9844,295,3254,611,9845
ALT_REF_LOCI_714,928,5674,173,5514,928,56717
ALT_REF_LOCI_81590,426590,426590,4260
ALT_REF_LOCI_911,680,8281,580,8281,680,8282