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GRCh38.p11

This assembly has been replaced. See current version

Description:: Genome Reference Consortium Human Build 38 patch release 11 (GRCh38.p11)
Organism name:: Homo sapiens (human)
BioProject:: PRJNA31257
Submitter:: Genome Reference Consortium
Date:: 2017/06/14
Synonyms:: hg38
Assembly type:: haploid-with-alt-loci
Release type:: patch
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000001405.26 (replaced)
RefSeq assembly accession:: GCF_000001405.37 (replaced)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 1132361 [UID] 4598738 [GenBank] 4616298 [RefSeq]

See Genome Information for Homo sapiens

Pathogen Detection Resources

There are 1094 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000001405.29	≠	GCF_000001405.40	GRCh38.p14	Chromosome	Latest GenBank, Latest RefSeq
GCA_000001405.28	≠	GCF_000001405.39	GRCh38.p13	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.27	≠	GCF_000001405.38	GRCh38.p12	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.26	=	GCF_000001405.37	GRCh38.p11	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.25	=	GCF_000001405.36	GRCh38.p10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.24	=	GCF_000001405.35	GRCh38.p9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.23	=	GCF_000001405.34	GRCh38.p8	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.22	=	GCF_000001405.33	GRCh38.p7	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.21	=	GCF_000001405.32	GRCh38.p6	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.20	=	GCF_000001405.31	GRCh38.p5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.19	=	GCF_000001405.30	GRCh38.p4	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.18	=	GCF_000001405.29	GRCh38.p3	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.17	=	GCF_000001405.28	GRCh38.p2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.16	=	GCF_000001405.27	GRCh38.p1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.15	=	GCF_000001405.26	GRCh38	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.14	=	GCF_000001405.25	GRCh37.p13	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.13	=	GCF_000001405.24	GRCh37.p12	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.12	=	GCF_000001405.23	GRCh37.p11	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.11	=	GCF_000001405.22	GRCh37.p10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.10	=	GCF_000001405.21	GRCh37.p9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.9	n/a	n/a	GRCh37.p8	Chromosome	Replaced GenBank
GCA_000001405.8	n/a	n/a	GRCh37.p7	Chromosome	Replaced GenBank
GCA_000001405.7	n/a	n/a	GRCh37.p6	Chromosome	Replaced GenBank
GCA_000001405.6	=	GCF_000001405.17	GRCh37.p5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.5	n/a	n/a	GRCh37.p4	Chromosome	Replaced GenBank
GCA_000001405.4	n/a	n/a	GRCh37.p3	Chromosome	Replaced GenBank
GCA_000001405.3	=	GCF_000001405.14	GRCh37.p2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.2	n/a	n/a	GRCh37.p1	Chromosome	Replaced GenBank
GCA_000001405.1	=	GCF_000001405.13	GRCh37	Chromosome	Replaced GenBank, Replaced RefSeq
n/a	n/a	GCF_000001405.12	NCBI36	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.11	NCBI35	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.10	NCBI34	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.9	NCBI34	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.8	NCBI33	Chromosome	Replaced RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Status::Updated annotation
Annotation Name::GCF_000001405.40-RS_2023_10
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::10.2
URL Organism::Homo_sapiens
Annotation Method::Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics*

Number of regions with alternate loci or patches	301
Total sequence length	3,099,734,149
Total ungapped length	2,948,611,470
Gaps between scaffolds	349
Number of scaffolds	473
Scaffold N50	67,794,873
Scaffold L50	16
Number of contigs	999
Contig N50	57,879,411
Contig L50	18
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	35,614

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

Supplemental Content

Access the data

Assembly Information

Related Information

BioProject
BioProject
Nucleotide INSDC
Nucleotide INSDC (GenBank)
Nucleotide RefSeq
Nucleotide RefSeq
PubMed
PubMed
Taxonomy
Taxonomy

PubMed articles for this assembly

Finishing the finished human chromosome 22 sequence.
Finishing the finished human chromosome 22 sequence.
Cole CG, McCann OT, Collins JE, Oliver K, Willey D...
The DNA sequence and biological annotation of human chromosome 1.
The DNA sequence and biological annotation of human chromosome 1.
Gregory SG, Barlow KF, McLay KE, Kaul R, Swarbreck D...
The DNA sequence, annotation and analysis of human chromosome 3.
The DNA sequence, annotation and analysis of human chromosome 3.
Muzny DM, Scherer SE, Kaul R, Wang J, Yu J...
DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage.
DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage.
Zody MC, Garber M, Adams DJ, Sharpe T, Harrow J...
Analysis of the DNA sequence and duplication history of human chromosome 15.
Analysis of the DNA sequence and duplication history of human chromosome 15.
Zody MC, Garber M, Sharpe T, Young SK, Rowen L...

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GRCh38.p11 - hg38 - Genome - Assembly - NCBI
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Assembly Definition
Assembly Statistics

Global assembly definition

Download the full sequence report

Click on the table row to see sequence details in the table to the right

Assembly Unit Name
Primary Assembly
PATCHES
ALT_REF_LOCI_1
ALT_REF_LOCI_2
ALT_REF_LOCI_3
ALT_REF_LOCI_4
ALT_REF_LOCI_5
ALT_REF_LOCI_6
ALT_REF_LOCI_7
ALT_REF_LOCI_8
ALT_REF_LOCI_9
ALT_REF_LOCI_10
ALT_REF_LOCI_11
ALT_REF_LOCI_12
ALT_REF_LOCI_13
ALT_REF_LOCI_14
ALT_REF_LOCI_15
ALT_REF_LOCI_16
ALT_REF_LOCI_17
ALT_REF_LOCI_18
ALT_REF_LOCI_19
ALT_REF_LOCI_20
ALT_REF_LOCI_21
ALT_REF_LOCI_22
ALT_REF_LOCI_23
ALT_REF_LOCI_24
ALT_REF_LOCI_25
ALT_REF_LOCI_26
ALT_REF_LOCI_27
ALT_REF_LOCI_28
ALT_REF_LOCI_29
ALT_REF_LOCI_30
ALT_REF_LOCI_31
ALT_REF_LOCI_32
ALT_REF_LOCI_33
ALT_REF_LOCI_34
ALT_REF_LOCI_35
non-nuclear

Regions

Name	Location
REGION108	1:2448811-2791270
PRAME_REGION_1	1:12818488-13312803
REGION200	1:17157487-17460319
REGION228	1:23237486-23579959
REGION189	1:26512383-26678582
REGION246	1:28206357-28366763
REGION109	1:30352191-30456601
FOXO6	1:41250328-41436604
REGION247	1:72287734-72419130
REGION229	1:103909381-104045121
REGION240	1:107987825-108539424
REGION190	1:112909422-113029606
CEN1	1:122026460-125184587
1Q21	1:144488706-144674781
REGION2	1:153700531-153865738
MTX1	1:155210382-155305245
REGION3	1:198370083-198725175
REGION199	1:210220259-210677001
RNA5S_REGION_1	1:228408802-228753027
REGION110	1:234163457-234211370
TBCE	1:235360200-235568613
REGION111	1:242987893-243895211
REGION112	1:245305697-245727576
OLFACTORY_REGION_3	1:248352027-248511794
REGION113	2:728878-860300
REGION114	2:1204935-1273724
REGION115	2:1315177-1541254
REGION121	2:3391898-3511146
REGION4	2:36225959-36363315
IGK	2:88891175-89330679
REGION116	2:90218337-90402511
CEN2	2:92188146-94090557
REGION117	2:115908855-116040717
REGION118	2:116874515-116981849
REGION248	2:126189128-126361783
REGION119	2:131697037-131806107
REGION44	2:148934069-149024119
SPC25	2:168830363-168937194
REGION233	2:205890983-206421450
REGION249	2:208007848-208142067
REGION201	2:233054663-233420161
REGION202	2:239696904-239905046
REGION120	2:241787903-242117508
REGION73	3:11815268-11986497
REGION235	3:16687511-17099186
REGION122	3:20277967-20382602
REGION192	3:44474647-44925818
SLC25A26	3:66023201-66396803
RYBP	3:72325441-72740399
REGION250	3:84799968-84960626
REGION210	3:90528825-90699772
CEN3	3:90772459-93655574
REGION191	3:91247723-91553319
REGION123	3:125665519-125883802
REGION5	3:151589366-151759498
REGION124	3:154111571-154282042
REGION125	3:166300784-166544173
REGION126	3:184425340-184533338
MUCIN_REGION_2	3:195629504-195827492
REGION127	3:197397856-197558882
REGION128	3:198047549-198235559
REGION222	4:14931450-15019028
REGION129	4:21521367-21734410
REGION6	4:34517955-34883858
CEN4	4:49708101-51743951
REGION130	4:55678095-55785754
REGION223	4:65880454-66040277
UGT2B17	4:68306359-69010457
REGION224	4:69959865-70191926
REGION131	4:120164199-120317014
REGION236	4:154079465-154493046
REGION7	4:155835378-155987264
REGION132	4:186920392-187048061
REGION133	4:188341423-188542359
REGION134	4:189361858-190204555
REGION135	5:502435-626896
SLC12A7	5:981494-1161361
SLC6A3	5:1318299-1509772
REGION251	5:3768476-3899281
REGION9	5:12681426-12744010
REGION193	5:21098347-21230960
GUSBP1	5:21481419-21713081
REGION61	5:29036498-29254469
REGION136	5:33800665-33963236
CEN5	5:46485901-50059807
SMA	5:69216819-71614443
MCTP1	5:95169857-95254491
REGION137	5:125279466-125444151
REGION8	5:162373667-162541648
REGION138	5:177865465-177996111
REGION234	5:179235294-179907499
GCNT2	6:10489117-10731912
REGION225	6:13101650-13179113
MHC	6:28510120-33480577
CEN6	6:58553889-59829934
REGION211	6:61123605-61470683
REGION139	6:65774814-65944033
REGION194	6:67533466-67796090
REGION140	6:68262879-68402208
REGION10	6:79350008-79446911
REGION214	6:82140389-82375901
CASP8AP2	6:89804656-89941739
REGION141	6:127654803-128521146
REGION142	6:166220580-166285980
REGION99	6:168796076-168951646
REGION143	6:169724799-169919706
REGION144	6:170272763-170535221
REGION145	7:10001-198548
CEN7	7:58169654-60828234
HET7	7:61377789-61528020
REGION146	7:76500982-76722751
REGION241	7:99092372-99228806
REGION147	7:103086563-103242097
REGION242	7:107154479-107622612
REGION11	7:141633409-141746583
TRB	7:142038121-143088503
REGION252	7:143380637-144630931
REGION148	7:148214874-148487860
REGION212	7:154422352-154602937
REGION149	7:157697532-157820586
REGION150	7:158267495-158477174
REGION151	8:718410-2817440
DEFENSIN_REGION_1	8:6604731-13171905
REGION243	8:21395510-21659610
ADAM5	8:39094318-39873856
CEN8	8:44033745-45877265
REGION244	8:57022151-57173350
REGION152	8:57173351-57303398
REGION153	8:128554723-128925740
REGION154	8:141333447-141461079
REGION155	8:141766834-141800272
REGION156	8:143009713-143163398
REGION157	8:143509961-143828794
SLC39A4	8:144269398-144434518
REGION158	8:144628750-144757761
REGION14	9:7428994-7577169
REGION226	9:8983671-9142737
REGION227	9:24949709-25079413
CEN9	9:43236168-45518558
REGION13	9:69413743-69477097
MAMDC2	9:70024113-70189318
REGION15	9:88179047-88227980
LPPR1	9:100948798-101378291
ABO	9:133174055-133504070
REGION16	10:27285655-27417608
REGION205	10:38918270-39338430
CEN10	10:39686683-41593521
REGION159	10:42103240-42298939
REGION18	10:45175233-45468971
REGION216	10:65503225-65684914
REGION195	10:74797382-75073121
REGION160	10:77761309-77931226
PTEN	10:87784179-88048756
REGION204	10:124109957-124195365
REGION203	10:131588434-131607480
REGION104	11:470360-678681
MUCIN_REGION_1	11:937258-1207515
KRTAP_REGION_2	11:1523474-1740879
REGION105	11:2767814-3065846
OLFACTORY_REGION_2	11:7779133-7972558
REGION19	11:25170407-25319080
OLFACTORY_REGION_4	11:49958373-50099251
CEN11	11:51078349-54425074
OLFACTORY_REGION_1	11:56189252-56873567
REGION106	11:69165291-69229344
REGION215	11:92232311-92410192
SLC37A4	11:118978401-119087276
REGION107	11:134773600-134962792
REGION50	12:10001-173298
REGION217	12:1033530-1135924
REGION253	12:1657857-2698722
PRH1_PRR4	12:10801295-11377386
REGION206	12:12031003-12572035
REGION196	12:17717409-17928910
REGION21	12:27996034-28110778
OVOS2	12:31111480-31347345
CEN12	12:34769408-37185252
REGION22	12:57932737-58092755
REGION23	12:58929265-59060870
REGION255	12:86094144-86261655
REGION232	12:86768210-87083988
REGION24	12:101111599-101258295
REGION254	12:121594225-121658918
REGION207	12:122057735-122145576
REGION161	12:123826509-123945954
REGION20	12:126227198-126405474
REGION162	12:130323076-130394967
REGION163	12:131543020-131584984
CEN13	13:16000001-18051248
BAGE5	13:18171249-18358106
REGION164	13:18698351-18884136
REGION165	13:25652362-25828680
REGION166	13:70341886-70442876
REGION218	13:84294441-84452423
REGION197	13:86269523-86292877
REGION167	13:89598964-89764093
REGION208	13:100900735-101049613
REGION219	13:108604134-108722945
REGION168	13:112182875-112505943
REGION169	13:113727531-113763795
REGION209	13:113936976-114147229
CEN14	14:16000001-18173523
REGION256	14:23699022-24389954
REGION257	14:63664049-63829157
REGION170	14:91535865-91854371
IGH	14:92885439-94394539
SERPIN_REGION_1	14:104449322-104622880
REGION171	14:105533003-106860219
CEN15	15:17000001-19725254
PRADER_WILLI	15:21242091-23226874
REGION25	15:27865714-32946929
TRIM69	15:44676664-44913053
MEGF11	15:65908183-66284818
REGION172	15:82289984-82641774
RAB11FIP3	16:400855-531525
REGION173	16:1871895-1933852
REGION221	16:2820536-2873621
PAM16	16:4299637-4530534
REGION174	16:14427144-16998739
REGION245	16:21176310-22760988
CEN16	16:36311159-38280682
REGION26	16:55772981-55968548
SNTB2	16:69140151-69224690
REGION220	16:71137292-71399966
CTRB1_CTRB2	16:75169811-75248387
REGION213	16:75930096-76091406
DOC2B_RPH3AL	17:60001-402637
RFLNB	17:402638-722442
ABR	17:960754-1449331
WDR81	17:1569973-1767739
POLR2A	17:7379544-7534268
REGION238	17:18239627-18506313
CEN17	17:22813680-26885980
CCL5_TBC1D3	17:35765469-38841755
KRTAP_REGION_1	17:40850733-41432935
MAPT	17:45309498-46903773
REGION237	17:52434177-52673566
REGION28	17:70306278-70524219
REGION175	17:71584518-71819311
REGION176	17:72833331-72935743
REGION30	17:77220730-77299326
B3GNTL1	17:82922720-83103577
CEN18	18:15460900-20861206
REGION230	18:22388680-22588100
REGION177	18:43667277-43773892
CTIF	18:48514982-48918117
REGION31	18:50292194-50574792
REGION32	18:51662936-51821642
REGION33	18:67423723-67552551
REGION258	18:70423088-70510260
REGION34	18:72933122-73024781
REGION35	18:78493467-78664469
REGION36	18:78934886-79088997
REGION178	18:79563122-79725366
ELANE	19:821158-881412
SBNO2	19:1107414-1158195
ZNF66	19:20663141-21042381
REGION37	19:21648290-21809032
REGION39	19:22120850-22300666
CEN19	19:24498981-27190874
REGION38	19:34152260-34300950
GPI	19:34350807-34392977
REGION231	19:38590365-38995717
FCGBP	19:39740125-40095774
CEACAM_REGION_1	19:41456581-41682000
LRC_KIR	19:54025634-55084318
REGION40	20:17771102-17893471
CEN20	20:26436233-30038348
REGION179	20:61886306-62008187
REGION181	20:63414721-63471095
REGION180	20:64095055-64274842
CEN21	21:10864561-12915808
REGION41	21:14424141-14475471
REGION182	21:17146893-17310433
REGION183	21:17603695-17744061
REGION42	21:22102474-22296968
REGION43	21:32769079-32837937
TMEM50B	21:33405429-33512559
SPATC1L	21:46140942-46221322
CEN22	22:12954789-15054318
IGL	22:22373449-22624257
REGION184	22:23354043-23516062
REGION185	22:23763639-24013509
APOL5	22:35685234-35942668
REGION186	22:36779214-36877704
APOBEC	22:38884294-39011160
CYP2D6	22:42077656-42253758
SHANK3	22:50663907-50764925
PAR#1	X:10001-2781479
REGION187	X:319338-601516
REGION239	X:4950957-5129468
CENX	X:58605580-62412542
REGION188	X:79965154-80097082
PAR#2	X:155701383-156030895
PAR#1	Y:10001-2781479
REGION259	Y:9034110-9132718
CENY	Y:10316945-10544039
REGION260	Y:21578942-21828659
REGION198	Y:56821510-56887902
PAR#2	Y:56887903-57217415
REGION1A	HSCHR15_4_CTG8:1-5161414

Assembly Unit: Primary Assembly (GCF_000001305.14)

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000663.2	=	NC_000001.11	9
Chromosome 2	CM000664.2	=	NC_000002.12	2
Chromosome 3	CM000665.2	=	NC_000003.12	1
Chromosome 4	CM000666.2	=	NC_000004.12	1
Chromosome 5	CM000667.2	=	NC_000005.10	1
Chromosome 6	CM000668.2	=	NC_000006.12	0
Chromosome 7	CM000669.2	=	NC_000007.14	0
Chromosome 8	CM000670.2	=	NC_000008.11	0
Chromosome 9	CM000671.2	=	NC_000009.12	4
Chromosome 10	CM000672.2	=	NC_000010.11	0
Chromosome 11	CM000673.2	=	NC_000011.10	1
Chromosome 12	CM000674.2	=	NC_000012.12	0
Chromosome 13	CM000675.2	=	NC_000013.11	0
Chromosome 14	CM000676.2	=	NC_000014.9	8
Chromosome 15	CM000677.2	=	NC_000015.10	1
Chromosome 16	CM000678.2	=	NC_000016.10	1
Chromosome 17	CM000679.2	=	NC_000017.11	3
Chromosome 18	CM000680.2	=	NC_000018.10	0
Chromosome 19	CM000681.2	=	NC_000019.10	0
Chromosome 20	CM000682.2	=	NC_000020.11	0
Chromosome 21	CM000683.2	=	NC_000021.9	0
Chromosome 22	CM000684.2	=	NC_000022.11	9
Chromosome X	CM000685.2	=	NC_000023.11	0
Chromosome Y	CM000686.2	=	NC_000024.10	1
unplaced	n/a	n/a	n/a	127

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	J01415.2	=	NC_012920.1

Assembly Unit: PATCHES (GCF_000005045.23)

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID	Patch type
HG1342_HG2282_PATCH	1	KQ031383.1	=	NW_012132914.1	fix
HSCHR1_5_CTG3	1	KQ983255.1	=	NW_015495298.1	novel
HG2095_PATCH	1	KN538361.1	=	NW_011332688.1	fix
HSCHR1_4_CTG3	1	KQ458383.1	=	NW_014040926.1	novel
HG2058_PATCH	1	KN196473.1	=	NW_009646195.1	fix
HSCHR1_8_CTG3	1	KZ208904.1	=	NW_018654706.1	novel
HG986_PATCH	1	KN196472.1	=	NW_009646194.1	fix
HSCHR1_9_CTG3	1	KZ208905.1	=	NW_018654707.1	novel
HSCHR1_3_CTG3	1	KQ458382.1	=	NW_014040925.1	novel
HSCHR1_6_CTG3	1	KV880763.1	=	NW_017852928.1	novel
HG2104_PATCH	1	KN196474.1	=	NW_009646196.1	fix
HG1832_PATCH	1	KN538360.1	=	NW_011332687.1	fix
HG2002_PATCH	1	KZ208906.1	=	NW_018654708.1	fix
HSCHR1_5_CTG32_1	1	KQ458384.1	=	NW_014040927.1	novel
HG2290_PATCH	2	KQ031384.1	=	NW_012132915.1	fix
HSCHR2_7_CTG7_2	2	KZ208907.1	=	NW_018654709.1	novel
HSCHR2_6_CTG7_2	2	KQ983256.1	=	NW_015495299.1	novel
HSCHR2_8_CTG7_2	2	KZ208908.1	=	NW_018654710.1	novel
HG2232_PATCH	2	KN538363.1	=	NW_011332690.1	fix
HG2233_PATCH	2	KN538362.1	=	NW_011332689.1	fix
HG2236_PATCH	3	KV766192.1	=	NW_017363813.1	fix
HG2066_PATCH	3	KN196475.1	=	NW_009646197.1	fix
HG2235_PATCH	3	KQ031385.1	=	NW_012132916.1	fix
HG126_PATCH	3	KN538364.1	=	NW_011332691.1	fix
HSCHR3_4_CTG1	3	KZ208909.1	=	NW_018654711.1	novel
HG2237_PATCH	3	KQ031386.1	=	NW_012132917.1	fix
HG2022_PATCH	3	KN196476.1	=	NW_009646198.1	fix
HSCHR4_2_CTG4	4	KQ090013.1	=	NW_013171799.1	novel
HSCHR4_8_CTG12	4	KQ090014.1	=	NW_013171800.1	novel
HSCHR4_9_CTG12	4	KQ090015.1	=	NW_013171801.1	novel
HSCHR4_12_CTG12	4	KV766193.1	=	NW_017363814.1	novel
HG2023_PATCH	4	KQ983257.1	=	NW_015495300.1	fix
HSCHR4_11_CTG12	4	KQ983258.1	=	NW_015495301.1	novel
HSCHR5_9_CTG1	5	KZ208910.1	=	NW_018654712.1	novel
HSCHR5_7_CTG1	5	KN196477.1	=	NW_009646199.1	novel
HSCHR5_8_CTG1	5	KV575243.1	=	NW_016107297.1	novel
HG30_PATCH	5	KV575244.1	=	NW_016107298.1	fix
HG2057_PATCH	6	KZ208911.1	=	NW_018654713.1	fix
HSCHR6_1_CTG10	6	KQ090017.1	=	NW_013171803.1	novel
HG1651_PATCH	6	KQ031387.1	=	NW_012132918.1	fix
HG2128_PATCH	6	KN196478.1	=	NW_009646200.1	fix
HG2072_PATCH	6	KQ090016.1	=	NW_013171802.1	fix
HG2121_PATCH	6	KV766194.1	=	NW_017363815.1	fix
HG2088_PATCH	7	KV880764.1	=	NW_017852929.1	fix
HG2266_PATCH	7	KV880765.1	=	NW_017852930.1	fix
HG708_PATCH	7	KZ208912.1	=	NW_018654714.1	fix
HSCHR7_3_CTG4_4	7	KZ208913.1	=	NW_018654715.1	novel
HG2239_PATCH	7	KQ031388.1	=	NW_012132919.1	fix
HG76_PATCH	8	KZ208915.1	=	NW_018654717.1	fix
HG2068_PATCH	8	KV880767.1	=	NW_017852932.1	fix
HG2067_PATCH	8	KV880766.1	=	NW_017852931.1	fix
HG2419_PATCH	8	KZ208914.1	=	NW_018654716.1	fix
HSCHR9_1_CTG6	9	KQ090018.1	=	NW_013171804.1	novel
HSCHR9_1_CTG7	9	KQ090019.1	=	NW_013171805.1	novel
HG2030_PATCH	9	KN196479.1	=	NW_009646201.1	fix
HG2244_HG2245_PATCH	10	KN538367.1	=	NW_011332694.1	fix
HSCHR10_1_CTG6	10	KQ090020.1	=	NW_013171806.1	novel
HG2191_PATCH	10	KN196480.1	=	NW_009646202.1	fix
HG2334_PATCH	10	KQ090021.1	=	NW_013171807.1	fix
HG2242_HG2243_PATCH	10	KN538366.1	=	NW_011332693.1	fix
HG2241_PATCH	10	KN538365.1	=	NW_011332692.1	fix
HG107_PATCH	11	KQ759759.1	=	NW_015148966.1	fix
HSCHR11_1_CTG1_2	11	KN538368.1	=	NW_011332695.1	novel
HG1708_PATCH	11	KV766195.1	=	NW_017363816.1	fix
HG2116_PATCH	11	KQ090022.1	=	NW_013171808.1	fix
HG2217_PATCH	11	KN196481.1	=	NW_009646203.1	fix
HSCHR12_2_CTG1	12	KQ090023.1	=	NW_013171809.1	novel
HG1815_PATCH	12	KZ208916.1	=	NW_018654718.1	fix
HG1362_PATCH	12	KN538369.1	=	NW_011332696.1	fix
HG23_PATCH	12	KN196482.1	=	NW_009646204.1	fix
HSCHR12_8_CTG2_1	12	KZ208918.1	=	NW_018654720.1	novel
HG2063_PATCH	12	KQ759760.1	=	NW_015148967.1	fix
HG2047_PATCH	12	KZ208917.1	=	NW_018654719.1	fix
HG2247_PATCH	12	KN538370.1	=	NW_011332697.1	fix
HG2291_PATCH	13	KN538372.1	=	NW_011332699.1	fix
HSCHR13_1_CTG7	13	KQ090024.1	=	NW_013171810.1	novel
HG2216_PATCH	13	KN196483.1	=	NW_009646205.1	fix
HG2249_PATCH	13	KN538373.1	=	NW_011332700.1	fix
HSCHR13_1_CTG8	13	KQ090025.1	=	NW_013171811.1	novel
HG2288_HG2289_PATCH	13	KN538371.1	=	NW_011332698.1	fix
HG1_PATCH	14	KZ208920.1	=	NW_018654722.1	fix
HSCHR14_8_CTG1	14	KZ208919.1	=	NW_018654721.1	novel
HG2139_PATCH	15	KN538374.1	=	NW_011332701.1	fix
HSCHR15_6_CTG8	15	KQ031389.1	=	NW_012132920.1	novel
HSCHR16_5_CTG1	16	KQ090026.1	=	NW_013171812.1	novel
HG926_PATCH	16	KV880768.1	=	NW_017852933.1	fix
HSCHR16_4_CTG3_1	16	KQ090027.1	=	NW_013171813.1	novel
HSCHR16_5_CTG3_1	16	KZ208921.1	=	NW_018654723.1	novel
HSCHR16_3_CTG3_1	16	KQ031390.1	=	NW_012132921.1	novel
HG2285_HG106_HG2252_PATCH	17	KV766196.1	=	NW_017363817.1	fix
HG2046_PATCH	17	KV575245.1	=	NW_016107299.1	fix
HSCHR17_3_CTG1	17	KV766198.1	=	NW_017363819.1	novel
HSCHR17_11_CTG4	17	KV766197.1	=	NW_017363818.1	novel
HSCHR18_5_CTG1_1	18	KQ458385.1	=	NW_014040928.1	novel
HG2213_PATCH	18	KQ090028.1	=	NW_013171814.1	fix
HG2442_PATCH	18	KZ208922.1	=	NW_018654724.1	fix
HG26_PATCH	19	KQ458386.1	=	NW_014040929.1	fix
HG2021_PATCH	19	KN196484.1	=	NW_009646206.1	fix
HSCHR19KIR_0019-4656-A_CTG3_1	19	KV575246.1	=	NW_016107300.1	novel
HSCHR19KIR_CA01-TA01_1_CTG3_1	19	KV575247.1	=	NW_016107301.1	novel
HSCHR19KIR_CA01-TA01_2_CTG3_1	19	KV575248.1	=	NW_016107302.1	novel
HSCHR19KIR_CA01-TB04_CTG3_1	19	KV575249.1	=	NW_016107303.1	novel
HSCHR19KIR_CA01-TB01_CTG3_1	19	KV575250.1	=	NW_016107304.1	novel
HSCHR19KIR_HG2394_CTG3_1	19	KV575251.1	=	NW_016107305.1	novel
HSCHR19KIR_502960008-2_CTG3_1	19	KV575252.1	=	NW_016107306.1	novel
HSCHR19KIR_502960008-1_CTG3_1	19	KV575253.1	=	NW_016107307.1	novel
HSCHR19KIR_0010-5217-AB_CTG3_1	19	KV575254.1	=	NW_016107308.1	novel
HSCHR19KIR_7191059-1_CTG3_1	19	KV575255.1	=	NW_016107309.1	novel
HSCHR19KIR_0019-4656-B_CTG3_1	19	KV575256.1	=	NW_016107310.1	novel
HSCHR19KIR_CA04_CTG3_1	19	KV575257.1	=	NW_016107311.1	novel
HSCHR19KIR_7191059-2_CTG3_1	19	KV575259.1	=	NW_016107313.1	novel
HSCHR19KIR_HG2396_CTG3_1	19	KV575260.1	=	NW_016107314.1	novel
HSCHR19KIR_HG2393_CTG3_1	19	KV575258.1	=	NW_016107312.1	novel
HSCHR22_4_CTG1	22	KN196485.1	=	NW_009646207.1	novel
HSCHR22_6_CTG1	22	KQ458387.1	=	NW_014040930.1	novel
HSCHR22_7_CTG1	22	KQ458388.1	=	NW_014040931.1	novel
HSCHR22_5_CTG1	22	KN196486.1	=	NW_009646208.1	novel
HSCHR22_8_CTG1	22	KQ759761.1	=	NW_015148968.1	novel
HG1311_PATCH	22	KQ759762.1	=	NW_015148969.1	fix
HSCHRX_3_CTG7	X	KV766199.1	=	NW_017363820.1	novel
HG1531_PATCH	Y	KZ208923.1	=	NW_018654725.1	fix
HG1535_PATCH	Y	KZ208924.1	=	NW_018654726.1	fix
HG2062_PATCH	Y	KN196487.1	=	NW_009646209.1	fix

Assembly Unit: ALT_REF_LOCI_1 (GCF_000001315.2)

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR1_1_CTG3	1	KI270762.1	=	NT_187515.1
HSCHR1_2_CTG3	1	KI270766.1	=	NT_187517.1
HSCHR1_1_CTG11	1	KI270760.1	=	NT_187514.1
HSCHR1_4_CTG31	1	KI270765.1	=	NT_187520.1
HSCHR1_1_CTG31	1	GL383518.1	=	NW_003315905.1
HSCHR1_2_CTG31	1	GL383519.1	=	NW_003315906.1
HSCHR1_3_CTG31	1	GL383520.2	=	NW_003315907.2
HSCHR1_4_CTG32_1	1	KI270764.1	=	NT_187521.1
HSCHR1_3_CTG32_1	1	KI270763.1	=	NT_187519.1
HSCHR1_1_CTG32_1	1	KI270759.1	=	NT_187516.1
HSCHR1_2_CTG32_1	1	KI270761.1	=	NT_187518.1
HSCHR2_2_CTG1	2	KI270770.1	=	NT_187525.1
HSCHR2_3_CTG1	2	KI270773.1	=	NT_187526.1
HSCHR2_4_CTG1	2	KI270774.1	=	NT_187529.1
HSCHR2_1_CTG1	2	KI270769.1	=	NT_187522.1
HSCHR2_1_CTG5	2	GL383521.1	=	NW_003315908.1
HSCHR2_1_CTG7	2	KI270772.1	=	NT_187524.1
HSCHR2_5_CTG7_2	2	KI270775.1	=	NT_187531.1
HSCHR2_4_CTG7_2	2	KI270771.1	=	NT_187530.1
HSCHR2_3_CTG7_2	2	KI270768.1	=	NT_187528.1
HSCHR2_2_CTG7_2	2	GL582966.2	=	NW_003571033.2
HSCHR2_1_CTG7_2	2	GL383522.1	=	NW_003315909.1
HSCHR2_3_CTG15	2	KI270776.1	=	NT_187527.1
HSCHR2_1_CTG15	2	KI270767.1	=	NT_187523.1
HSCHR3_1_CTG1	3	JH636055.2	=	NW_003871060.2
HSCHR3_3_CTG1	3	KI270783.1	=	NT_187535.1
HSCHR3_4_CTG2_1	3	KI270780.1	=	NT_187537.1
HSCHR3_1_CTG2_1	3	GL383526.1	=	NW_003315913.1
HSCHR3_2_CTG2_1	3	KI270777.1	=	NT_187533.1
HSCHR3_3_CTG2_1	3	KI270778.1	=	NT_187536.1
HSCHR3_5_CTG2_1	3	KI270781.1	=	NT_187538.1
HSCHR3_1_CTG3	3	KI270779.1	=	NT_187532.1
HSCHR3_2_CTG3	3	KI270782.1	=	NT_187534.1
HSCHR3_9_CTG3	3	KI270784.1	=	NT_187539.1
HSCHR4_1_CTG4	4	KI270790.1	=	NT_187540.1
HSCHR4_1_CTG6	4	GL383528.1	=	NW_003315915.1
HSCHR4_1_CTG8_1	4	KI270787.1	=	NT_187541.1
HSCHR4_1_CTG9	4	GL000257.2	=	NT_167250.2
HSCHR4_4_CTG12	4	KI270788.1	=	NT_187544.1
HSCHR4_1_CTG12	4	GL383527.1	=	NW_003315914.1
HSCHR4_2_CTG12	4	KI270785.1	=	NT_187542.1
HSCHR4_5_CTG12	4	KI270789.1	=	NT_187545.1
HSCHR4_3_CTG12	4	KI270786.1	=	NT_187543.1
HSCHR5_5_CTG1	5	KI270793.1	=	NT_187550.1
HSCHR5_4_CTG1	5	KI270792.1	=	NT_187548.1
HSCHR5_3_CTG1	5	KI270791.1	=	NT_187547.1
HSCHR5_1_CTG1	5	GL383532.1	=	NW_003315920.1
HSCHR5_2_CTG1	5	GL949742.1	=	NW_003571036.1
HSCHR5_6_CTG1	5	KI270794.1	=	NT_187551.1
HSCHR5_2_CTG1_1	5	GL339449.2	=	NW_003315917.2
HSCHR5_3_CTG1_1	5	GL383530.1	=	NW_003315918.1
HSCHR5_4_CTG1_1	5	KI270796.1	=	NT_187549.1
HSCHR5_1_CTG5	5	GL383531.1	=	NW_003315919.1
HSCHR5_2_CTG5	5	KI270795.1	=	NT_187546.1
HSCHR6_MHC_APD_CTG1	6	GL000250.2	=	NT_167244.2
HSCHR6_1_CTG7	6	KI270800.1	=	NT_187555.1
HSCHR6_1_CTG6	6	KI270799.1	=	NT_187554.1
HSCHR6_1_CTG2	6	GL383533.1	=	NW_003315921.1
HSCHR6_1_CTG8	6	KI270801.1	=	NT_187556.1
HSCHR6_1_CTG9	6	KI270802.1	=	NT_187557.1
HSCHR6_1_CTG3	6	KB021644.2	=	NW_004166862.2
HSCHR6_1_CTG4	6	KI270797.1	=	NT_187552.1
HSCHR6_1_CTG5	6	KI270798.1	=	NT_187553.1
HSCHR7_1_CTG1	7	KI270804.1	=	NT_187558.1
HSCHR7_2_CTG4_4	7	KI270809.1	=	NT_187561.1
HSCHR7_1_CTG4_4	7	KI270806.1	=	NT_187559.1
HSCHR7_1_CTG6	7	GL383534.2	=	NW_003315922.2
HSCHR7_2_CTG6	7	KI270803.1	=	NT_187562.1
HSCHR7_3_CTG6	7	KI270808.1	=	NT_187564.1
HSCHR7_2_CTG7	7	KI270807.1	=	NT_187563.1
HSCHR7_1_CTG7	7	KI270805.1	=	NT_187560.1
HSCHR8_4_CTG1	8	KI270818.1	=	NT_187572.1
HSCHR8_2_CTG1	8	KI270812.1	=	NT_187568.1
HSCHR8_1_CTG1	8	KI270811.1	=	NT_187565.1
HSCHR8_8_CTG1	8	KI270821.1	=	NT_187576.1
HSCHR8_3_CTG1	8	KI270813.1	=	NT_187570.1
HSCHR8_9_CTG1	8	KI270822.1	=	NT_187577.1
HSCHR8_1_CTG6	8	KI270814.1	=	NT_187566.1
HSCHR8_1_CTG7	8	KI270810.1	=	NT_187567.1
HSCHR8_5_CTG7	8	KI270819.1	=	NT_187574.1
HSCHR8_6_CTG7	8	KI270820.1	=	NT_187575.1
HSCHR8_4_CTG7	8	KI270817.1	=	NT_187573.1
HSCHR8_3_CTG7	8	KI270816.1	=	NT_187571.1
HSCHR8_2_CTG7	8	KI270815.1	=	NT_187569.1
HSCHR9_1_CTG1	9	GL383539.1	=	NW_003315928.1
HSCHR9_1_CTG2	9	GL383540.1	=	NW_003315929.1
HSCHR9_1_CTG3	9	GL383541.1	=	NW_003315930.1
HSCHR9_1_CTG4	9	GL383542.1	=	NW_003315931.1
HSCHR9_1_CTG5	9	KI270823.1	=	NT_187578.1
HSCHR10_1_CTG1	10	GL383545.1	=	NW_003315934.1
HSCHR10_1_CTG3	10	KI270824.1	=	NT_187579.1
HSCHR10_1_CTG2	10	GL383546.1	=	NW_003315935.1
HSCHR10_1_CTG4	10	KI270825.1	=	NT_187580.1
HSCHR11_1_CTG8	11	KI270832.1	=	NT_187586.1
HSCHR11_1_CTG6	11	KI270830.1	=	NT_187584.1
HSCHR11_1_CTG7	11	KI270831.1	=	NT_187585.1
HSCHR11_1_CTG5	11	KI270829.1	=	NT_187583.1
HSCHR11_1_CTG1_1	11	GL383547.1	=	NW_003315936.1
HG142_HG150_NOVEL_TEST	11	JH159136.1	=	NW_003871073.1
HG151_NOVEL_TEST	11	JH159137.1	=	NW_003871074.1
HSCHR11_1_CTG3	11	KI270827.1	=	NT_187582.1
HSCHR11_1_CTG2	11	KI270826.1	=	NT_187581.1
HSCHR12_1_CTG1	12	GL877875.1	=	NW_003571049.1
HSCHR12_2_CTG2	12	GL877876.1	=	NW_003571050.1
HSCHR12_5_CTG2	12	KI270837.1	=	NT_187588.1
HSCHR12_1_CTG2	12	GL383549.1	=	NW_003315938.1
HSCHR12_4_CTG2	12	KI270835.1	=	NT_187587.1
HSCHR12_1_CTG2_1	12	GL383550.2	=	NW_003315939.2
HSCHR12_2_CTG2_1	12	GL383552.1	=	NW_003315941.1
HSCHR12_3_CTG2_1	12	GL383553.2	=	NW_003315942.2
HSCHR12_6_CTG2_1	12	KI270834.1	=	NT_187590.1
HSCHR12_4_CTG2_1	12	GL383551.1	=	NW_003315940.1
HSCHR12_5_CTG2_1	12	KI270833.1	=	NT_187589.1
HSCHR12_7_CTG2_1	12	KI270836.1	=	NT_187591.1
HSCHR13_1_CTG3	13	KI270840.1	=	NT_187594.1
HSCHR13_1_CTG2	13	KI270839.1	=	NT_187593.1
HSCHR13_1_CTG6	13	KI270843.1	=	NT_187597.1
HSCHR13_1_CTG4	13	KI270841.1	=	NT_187595.1
HSCHR13_1_CTG1	13	KI270838.1	=	NT_187592.1
HSCHR13_1_CTG5	13	KI270842.1	=	NT_187596.1
HSCHR14_1_CTG1	14	KI270844.1	=	NT_187598.1
HSCHR14_7_CTG1	14	KI270847.1	=	NT_187601.1
HSCHR14_2_CTG1	14	KI270845.1	=	NT_187599.1
HSCHR14_3_CTG1	14	KI270846.1	=	NT_187600.1
HSCHR15_1_CTG1	15	KI270852.1	=	NT_187602.1
HSCHR15_3_CTG3	15	KI270851.1	=	NT_187604.1
HSCHR15_1_CTG3	15	KI270848.1	=	NT_187603.1
HSCHR15_1_CTG8	15	GL383554.1	=	NW_003315943.1
HSCHR15_3_CTG8	15	KI270849.1	=	NT_187605.1
HSCHR15_2_CTG8	15	GL383555.2	=	NW_003315944.2
HSCHR15_5_CTG8	15	KI270850.1	=	NT_187606.1
HSCHR16_CTG2	16	KI270854.1	=	NT_187610.1
HSCHR16_4_CTG1	16	KI270856.1	=	NT_187609.1
HSCHR16_3_CTG1	16	KI270855.1	=	NT_187608.1
HSCHR16_1_CTG1	16	KI270853.1	=	NT_187607.1
HSCHR16_1_CTG3_1	16	GL383556.1	=	NW_003315945.1
HSCHR16_2_CTG3_1	16	GL383557.1	=	NW_003315946.1
HSCHR17_1_CTG1	17	GL383563.3	=	NW_003315952.3
HSCHR17_2_CTG2	17	KI270862.1	=	NT_187613.1
HSCHR17_1_CTG2	17	KI270861.1	=	NT_187611.1
HSCHR17_7_CTG4	17	KI270857.1	=	NT_187614.1
HSCHR17_4_CTG4	17	JH159146.1	=	NW_003871091.1
HSCHR17_5_CTG4	17	JH159147.1	=	NW_003871092.1
HSCHR17_1_CTG4	17	GL383564.2	=	NW_003315953.2
HSCHR17_1_CTG5	17	GL000258.2	=	NT_167251.2
HSCHR17_2_CTG4	17	GL383565.1	=	NW_003315954.1
HSCHR17_8_CTG4	17	KI270858.1	=	NT_187615.1
HSCHR17_9_CTG4	17	KI270859.1	=	NT_187616.1
HSCHR17_3_CTG4	17	GL383566.1	=	NW_003315955.1
HSCHR17_1_CTG9	17	KI270860.1	=	NT_187612.1
HSCHR18_4_CTG1_1	18	KI270864.1	=	NT_187618.1
HSCHR18_1_CTG1_1	18	GL383567.1	=	NW_003315956.1
HSCHR18_2_CTG1_1	18	GL383570.1	=	NW_003315959.1
HSCHR18_2_CTG2	18	GL383571.1	=	NW_003315960.1
HSCHR18_1_CTG2	18	GL383568.1	=	NW_003315957.1
HSCHR18_1_CTG2_1	18	GL383569.1	=	NW_003315958.1
HSCHR18_2_CTG2_1	18	GL383572.1	=	NW_003315961.1
HSCHR18_3_CTG2_1	18	KI270863.1	=	NT_187617.1
HSCHR19_5_CTG2	19	KI270868.1	=	NT_187622.1
HSCHR19_4_CTG2	19	KI270865.1	=	NT_187621.1
HSCHR19_1_CTG2	19	GL383573.1	=	NW_003315962.1
HSCHR19_2_CTG2	19	GL383575.2	=	NW_003315964.2
HSCHR19_3_CTG2	19	GL383576.1	=	NW_003315965.1
HSCHR19_1_CTG3_1	19	GL383574.1	=	NW_003315963.1
HSCHR19_2_CTG3_1	19	KI270866.1	=	NT_187619.1
HSCHR19_3_CTG3_1	19	KI270867.1	=	NT_187620.1
HSCHR19LRC_COX1_CTG3_1	19	GL949746.1	=	NW_003571054.1
HSCHR20_1_CTG1	20	GL383577.2	=	NW_003315966.2
HSCHR20_1_CTG2	20	KI270869.1	=	NT_187623.1
HSCHR20_1_CTG4	20	KI270871.1	=	NT_187625.1
HSCHR20_1_CTG3	20	KI270870.1	=	NT_187624.1
HSCHR21_1_CTG1_1	21	GL383578.2	=	NW_003315967.2
HSCHR21_8_CTG1_1	21	KI270874.1	=	NT_187628.1
HSCHR21_6_CTG1_1	21	KI270873.1	=	NT_187627.1
HSCHR21_2_CTG1_1	21	GL383579.2	=	NW_003315968.2
HSCHR21_3_CTG1_1	21	GL383580.2	=	NW_003315969.2
HSCHR21_4_CTG1_1	21	GL383581.2	=	NW_003315970.2
HSCHR21_5_CTG2	21	KI270872.1	=	NT_187626.1
HSCHR22_1_CTG3	22	KI270875.1	=	NT_187629.1
HSCHR22_1_CTG6	22	KI270878.1	=	NT_187632.1
HSCHR22_1_CTG7	22	KI270879.1	=	NT_187633.1
HSCHR22_1_CTG4	22	KI270876.1	=	NT_187630.1
HSCHR22_1_CTG5	22	KI270877.1	=	NT_187631.1
HSCHR22_1_CTG2	22	GL383583.2	=	NW_003315972.2
HSCHR22_1_CTG1	22	GL383582.2	=	NW_003315971.2
HSCHRX_1_CTG3	X	KI270880.1	=	NT_187634.1
HSCHRX_2_CTG12	X	KI270881.1	=	NT_187635.1

Assembly Unit: ALT_REF_LOCI_2 (GCF_000001325.3)

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR1_ALT2_1_CTG32_1	1	KI270892.1	=	NT_187646.1
HSCHR2_2_CTG7	2	KI270894.1	=	NT_187648.1
HSCHR2_2_CTG15	2	KI270893.1	=	NT_187647.1
HSCHR3_3_CTG3	3	KI270895.1	=	NT_187649.1
HSCHR4_6_CTG12	4	KI270896.1	=	NT_187650.1
HSCHR5_1_CTG1_1	5	KI270897.1	=	NT_187651.1
HSCHR5_3_CTG5	5	KI270898.1	=	NT_187652.1
HSCHR6_MHC_COX_CTG1	6	GL000251.2	=	NT_113891.3
HSCHR7_2_CTG1	7	KI270899.1	=	NT_187653.1
HSCHR8_6_CTG1	8	KI270901.1	=	NT_187655.1
HSCHR8_5_CTG1	8	KI270900.1	=	NT_187654.1
HSCHR11_2_CTG1	11	KI270902.1	=	NT_187656.1
HSCHR11_2_CTG1_1	11	KI270903.1	=	NT_187657.1
HSCHR12_3_CTG2	12	KI270904.1	=	NT_187658.1
HSCHR15_2_CTG3	15	KI270906.1	=	NT_187659.1
HSCHR15_4_CTG8	15	KI270905.1	=	NT_187660.1
HSCHR17_2_CTG1	17	KI270907.1	=	NT_187662.1
HSCHR17_3_CTG2	17	KI270910.1	=	NT_187664.1
HSCHR17_10_CTG4	17	KI270909.1	=	NT_187661.1
HSCHR17_6_CTG4	17	JH159148.1	=	NW_003871093.1
HSCHR17_2_CTG5	17	KI270908.1	=	NT_187663.1
HSCHR18_ALT21_CTG2_1	18	KI270912.1	=	NT_187665.1
HSCHR18_ALT2_CTG2_1	18	KI270911.1	=	NT_187666.1
HSCHR19LRC_COX2_CTG3_1	19	GL949747.2	=	NW_003571055.2
HSCHR22_2_CTG1	22	KB663609.1	=	NW_004504305.1
HSCHRX_2_CTG3	X	KI270913.1	=	NT_187667.1

Assembly Unit: ALT_REF_LOCI_3 (GCF_000001335.2)

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR3_4_CTG3	3	KI270924.1	=	NT_187678.1
HSCHR4_7_CTG12	4	KI270925.1	=	NT_187679.1
HSCHR6_MHC_DBB_CTG1	6	GL000252.2	=	NT_167245.2
HSCHR8_7_CTG1	8	KI270926.1	=	NT_187680.1
HSCHR11_3_CTG1	11	KI270927.1	=	NT_187681.1
HSCHR19LRC_LRC_I_CTG3_1	19	GL949748.2	=	NW_003571056.2
HSCHR22_3_CTG1	22	KI270928.1	=	NT_187682.1

Assembly Unit: ALT_REF_LOCI_4 (GCF_000001345.2)

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR3_5_CTG3	3	KI270934.1	=	NT_187688.1
HSCHR6_MHC_MANN_CTG1	6	GL000253.2	=	NT_167246.2
HSCHR19LRC_LRC_J_CTG3_1	19	GL949749.2	=	NW_003571057.2

Assembly Unit: ALT_REF_LOCI_5 (GCF_000001355.2)

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR3_6_CTG3	3	KI270935.1	=	NT_187689.1
HSCHR6_MHC_MCF_CTG1	6	GL000254.2	=	NT_167247.2
HSCHR19LRC_LRC_S_CTG3_1	19	GL949750.2	=	NW_003571058.2

Assembly Unit: ALT_REF_LOCI_6 (GCF_000001365.3)

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR3_7_CTG3	3	KI270936.1	=	NT_187690.1
HSCHR6_MHC_QBL_CTG1	6	GL000255.2	=	NT_167248.2
HSCHR19LRC_LRC_T_CTG3_1	19	GL949751.2	=	NW_003571059.2

Assembly Unit: ALT_REF_LOCI_7 (GCF_000001375.2)

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR3_8_CTG3	3	KI270937.1	=	NT_187691.1
HSCHR6_MHC_SSTO_CTG1	6	GL000256.2	=	NT_167249.2
HSCHR19LRC_PGF1_CTG3_1	19	GL949752.1	=	NW_003571060.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR6_8_CTG1	6	KI270758.1	=	NT_187692.1
HSCHR19LRC_PGF2_CTG3_1	19	GL949753.2	=	NW_003571061.2

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19_4_CTG3_1	19	KI270938.1	=	NT_187693.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_FH15_B_HAP_CTG3_1	19	KI270882.1	=	NT_187636.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_G085_A_HAP_CTG3_1	19	KI270883.1	=	NT_187637.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_G085_BA1_HAP_CTG3_1	19	KI270884.1	=	NT_187638.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_G248_A_HAP_CTG3_1	19	KI270885.1	=	NT_187639.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_G248_BA2_HAP_CTG3_1	19	KI270886.1	=	NT_187640.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_GRC212_AB_HAP_CTG3_1	19	KI270887.1	=	NT_187641.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_GRC212_BA1_HAP_CTG3_1	19	KI270888.1	=	NT_187642.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_LUCE_A_HAP_CTG3_1	19	KI270889.1	=	NT_187643.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1	19	KI270890.1	=	NT_187644.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_RSH_A_HAP_CTG3_1	19	KI270891.1	=	NT_187645.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_RSH_BA2_HAP_CTG3_1	19	KI270914.1	=	NT_187668.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_T7526_A_HAP_CTG3_1	19	KI270915.1	=	NT_187669.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_T7526_BDEL_HAP_CTG3_1	19	KI270916.1	=	NT_187670.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_ABC08_A1_HAP_CTG3_1	19	KI270917.1	=	NT_187671.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1	19	KI270918.1	=	NT_187672.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1	19	KI270919.1	=	NT_187673.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_FH05_A_HAP_CTG3_1	19	KI270920.1	=	NT_187674.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_FH05_B_HAP_CTG3_1	19	KI270921.1	=	NT_187675.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_FH06_A_HAP_CTG3_1	19	KI270922.1	=	NT_187676.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_FH06_BA1_HAP_CTG3_1	19	KI270923.1	=	NT_187677.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_FH08_A_HAP_CTG3_1	19	KI270929.1	=	NT_187683.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_FH08_BAX_HAP_CTG3_1	19	KI270930.1	=	NT_187684.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_FH13_A_HAP_CTG3_1	19	KI270931.1	=	NT_187685.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_FH13_BA2_HAP_CTG3_1	19	KI270932.1	=	NT_187686.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_FH15_A_HAP_CTG3_1	19	KI270933.1	=	NT_187687.1

Scaffold name	Chromosome assignment	GenBank ID		RefSeq ID
HSCHR19KIR_RP5_B_HAP_CTG3_1	19	GL000209.2	=	NT_113949.2

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR1_1_CTG3	1	KI270762.1	=	NT_187515.1	alt-scaffold

Region: PRAME_REGION_11:12818488-13312803

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR1_2_CTG3	1	KI270766.1	=	NT_187517.1	alt-scaffold
HG1342_HG2282_PATCH	1	KQ031383.1	=	NW_012132914.1	fix patch
HSCHR1_5_CTG3	1	KQ983255.1	=	NW_015495298.1	novel patch

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HG2095_PATCH	1	KN538361.1	=	NW_011332688.1	fix patch

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR1_4_CTG3	1	KQ458383.1	=	NW_014040926.1	novel patch

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HG2058_PATCH	1	KN196473.1	=	NW_009646195.1	fix patch

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR1_8_CTG3	1	KZ208904.1	=	NW_018654706.1	novel patch

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR1_1_CTG11	1	KI270760.1	=	NT_187514.1	alt-scaffold

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HG986_PATCH	1	KN196472.1	=	NW_009646194.1	fix patch

Region: OLFACTORY_REGION_31:248352027-248511794

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR1_2_CTG32_1	1	KI270761.1	=	NT_187518.1	alt-scaffold
HSCHR1_ALT2_1_CTG32_1	1	KI270892.1	=	NT_187646.1	alt-scaffold

Region: REGION1202:241787903-242117508

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR2_1_CTG15	2	KI270767.1	=	NT_187523.1	alt-scaffold
HSCHR2_3_CTG15	2	KI270776.1	=	NT_187527.1	alt-scaffold
HSCHR2_2_CTG15	2	KI270893.1	=	NT_187647.1	alt-scaffold

Region: MUCIN_REGION_23:195629504-195827492

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR3_1_CTG3	3	KI270779.1	=	NT_187532.1	alt-scaffold
HSCHR3_3_CTG3	3	KI270895.1	=	NT_187649.1	alt-scaffold
HSCHR3_4_CTG3	3	KI270924.1	=	NT_187678.1	alt-scaffold
HSCHR3_5_CTG3	3	KI270934.1	=	NT_187688.1	alt-scaffold
HSCHR3_6_CTG3	3	KI270935.1	=	NT_187689.1	alt-scaffold
HSCHR3_7_CTG3	3	KI270936.1	=	NT_187690.1	alt-scaffold
HSCHR3_8_CTG3	3	KI270937.1	=	NT_187691.1	alt-scaffold

Region: REGION1344:189361858-190204555

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR4_3_CTG12	4	KI270786.1	=	NT_187543.1	alt-scaffold
HSCHR4_6_CTG12	4	KI270896.1	=	NT_187650.1	alt-scaffold
HSCHR4_7_CTG12	4	KI270925.1	=	NT_187679.1	alt-scaffold
HG2023_PATCH	4	KQ983257.1	=	NW_015495300.1	fix patch
HSCHR4_11_CTG12	4	KQ983258.1	=	NW_015495301.1	novel patch

Region: MHC6:28510120-33480577

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR6_MHC_APD_CTG1	6	GL000250.2	=	NT_167244.2	alt-scaffold
HSCHR6_MHC_COX_CTG1	6	GL000251.2	=	NT_113891.3	alt-scaffold
HSCHR6_MHC_DBB_CTG1	6	GL000252.2	=	NT_167245.2	alt-scaffold
HSCHR6_MHC_MANN_CTG1	6	GL000253.2	=	NT_167246.2	alt-scaffold
HSCHR6_MHC_MCF_CTG1	6	GL000254.2	=	NT_167247.2	alt-scaffold
HSCHR6_MHC_QBL_CTG1	6	GL000255.2	=	NT_167248.2	alt-scaffold
HSCHR6_MHC_SSTO_CTG1	6	GL000256.2	=	NT_167249.2	alt-scaffold
HSCHR6_8_CTG1	6	KI270758.1	=	NT_187692.1	alt-scaffold

Region: REGION2527:143380637-144630931

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HG708_PATCH	7	KZ208912.1	=	NW_018654714.1	fix patch
HSCHR7_3_CTG4_4	7	KZ208913.1	=	NW_018654715.1	novel patch

Region: REGION1518:718410-2817440

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR8_1_CTG1	8	KI270811.1	=	NT_187565.1	alt-scaffold
HSCHR8_2_CTG1	8	KI270812.1	=	NT_187568.1	alt-scaffold
HSCHR8_4_CTG1	8	KI270818.1	=	NT_187572.1	alt-scaffold
HSCHR8_8_CTG1	8	KI270821.1	=	NT_187576.1	alt-scaffold
HSCHR8_5_CTG1	8	KI270900.1	=	NT_187654.1	alt-scaffold
HSCHR8_6_CTG1	8	KI270901.1	=	NT_187655.1	alt-scaffold
HSCHR8_7_CTG1	8	KI270926.1	=	NT_187680.1	alt-scaffold

Region: DEFENSIN_REGION_18:6604731-13171905

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR8_3_CTG1	8	KI270813.1	=	NT_187570.1	alt-scaffold
HG76_PATCH	8	KZ208915.1	=	NW_018654717.1	fix patch

Region: MUCIN_REGION_111:937258-1207515

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR11_2_CTG1	11	KI270902.1	=	NT_187656.1	alt-scaffold
HSCHR11_3_CTG1	11	KI270927.1	=	NT_187681.1	alt-scaffold
HG107_PATCH	11	KQ759759.1	=	NW_015148966.1	fix patch

Region: KRTAP_REGION_211:1523474-1740879

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR11_1_CTG6	11	KI270830.1	=	NT_187584.1	alt-scaffold
HSCHR11_2_CTG1_1	11	KI270903.1	=	NT_187657.1	alt-scaffold

Region: OLFACTORY_REGION_211:7779133-7972558

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR11_1_CTG5	11	KI270829.1	=	NT_187583.1	alt-scaffold
HSCHR11_1_CTG1_2	11	KN538368.1	=	NW_011332695.1	novel patch

Region: OLFACTORY_REGION_111:56189252-56873567

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HG142_HG150_NOVEL_TEST	11	JH159136.1	=	NW_003871073.1	alt-scaffold
HG151_NOVEL_TEST	11	JH159137.1	=	NW_003871074.1	alt-scaffold

Region: PRH1_PRR412:10801295-11377386

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR12_2_CTG2	12	GL877876.1	=	NW_003571050.1	alt-scaffold
HSCHR12_5_CTG2	12	KI270837.1	=	NT_187588.1	alt-scaffold
HSCHR12_3_CTG2	12	KI270904.1	=	NT_187658.1	alt-scaffold

Region: PRADER_WILLI15:21242091-23226874

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR15_1_CTG1	15	KI270852.1	=	NT_187602.1	alt-scaffold
HSCHR15_1_CTG3	15	KI270848.1	=	NT_187603.1	alt-scaffold
HSCHR15_3_CTG3	15	KI270851.1	=	NT_187604.1	alt-scaffold
HSCHR15_2_CTG3	15	KI270906.1	=	NT_187659.1	alt-scaffold

Region: REGION2515:27865714-32946929

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR15_1_CTG8	15	GL383554.1	=	NW_003315943.1	alt-scaffold
HSCHR15_4_CTG8	15	KI270905.1	=	NT_187660.1	alt-scaffold
HSCHR15_6_CTG8	15	KQ031389.1	=	NW_012132920.1	novel patch

Region: DOC2B_RPH3AL17:60001-402637

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR17_1_CTG1	17	GL383563.3	=	NW_003315952.3	alt-scaffold
HSCHR17_2_CTG1	17	KI270907.1	=	NT_187662.1	alt-scaffold

Region: CCL5_TBC1D317:35765469-38841755

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR17_7_CTG4	17	KI270857.1	=	NT_187614.1	alt-scaffold
HSCHR17_10_CTG4	17	KI270909.1	=	NT_187661.1	alt-scaffold

Region: KRTAP_REGION_117:40850733-41432935

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR17_1_CTG4	17	GL383564.2	=	NW_003315953.2	alt-scaffold
HSCHR17_4_CTG4	17	JH159146.1	=	NW_003871091.1	alt-scaffold
HSCHR17_5_CTG4	17	JH159147.1	=	NW_003871092.1	alt-scaffold
HSCHR17_6_CTG4	17	JH159148.1	=	NW_003871093.1	alt-scaffold

Region: REGION3518:78493467-78664469

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR18_1_CTG2_1	18	GL383569.1	=	NW_003315958.1	alt-scaffold
HSCHR18_ALT21_CTG2_1	18	KI270912.1	=	NT_187665.1	alt-scaffold

Region: REGION3618:78934886-79088997

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR18_2_CTG2_1	18	GL383572.1	=	NW_003315961.1	alt-scaffold
HSCHR18_ALT2_CTG2_1	18	KI270911.1	=	NT_187666.1	alt-scaffold

Region: LRC_KIR19:54025634-55084318

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR19LRC_COX1_CTG3_1	19	GL949746.1	=	NW_003571054.1	alt-scaffold
HSCHR19KIR_FH15_B_HAP_CTG3_1	19	KI270882.1	=	NT_187636.1	alt-scaffold
HSCHR19KIR_G085_A_HAP_CTG3_1	19	KI270883.1	=	NT_187637.1	alt-scaffold
HSCHR19KIR_G085_BA1_HAP_CTG3_1	19	KI270884.1	=	NT_187638.1	alt-scaffold
HSCHR19KIR_G248_A_HAP_CTG3_1	19	KI270885.1	=	NT_187639.1	alt-scaffold
HSCHR19KIR_G248_BA2_HAP_CTG3_1	19	KI270886.1	=	NT_187640.1	alt-scaffold
HSCHR19KIR_GRC212_AB_HAP_CTG3_1	19	KI270887.1	=	NT_187641.1	alt-scaffold
HSCHR19KIR_GRC212_BA1_HAP_CTG3_1	19	KI270888.1	=	NT_187642.1	alt-scaffold
HSCHR19KIR_LUCE_A_HAP_CTG3_1	19	KI270889.1	=	NT_187643.1	alt-scaffold
HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1	19	KI270890.1	=	NT_187644.1	alt-scaffold
HSCHR19KIR_RSH_A_HAP_CTG3_1	19	KI270891.1	=	NT_187645.1	alt-scaffold
HSCHR19LRC_COX2_CTG3_1	19	GL949747.2	=	NW_003571055.2	alt-scaffold
HSCHR19KIR_RSH_BA2_HAP_CTG3_1	19	KI270914.1	=	NT_187668.1	alt-scaffold
HSCHR19KIR_T7526_A_HAP_CTG3_1	19	KI270915.1	=	NT_187669.1	alt-scaffold
HSCHR19KIR_T7526_BDEL_HAP_CTG3_1	19	KI270916.1	=	NT_187670.1	alt-scaffold
HSCHR19KIR_ABC08_A1_HAP_CTG3_1	19	KI270917.1	=	NT_187671.1	alt-scaffold
HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1	19	KI270918.1	=	NT_187672.1	alt-scaffold
HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1	19	KI270919.1	=	NT_187673.1	alt-scaffold
HSCHR19KIR_FH05_A_HAP_CTG3_1	19	KI270920.1	=	NT_187674.1	alt-scaffold
HSCHR19KIR_FH05_B_HAP_CTG3_1	19	KI270921.1	=	NT_187675.1	alt-scaffold
HSCHR19KIR_FH06_A_HAP_CTG3_1	19	KI270922.1	=	NT_187676.1	alt-scaffold
HSCHR19KIR_FH06_BA1_HAP_CTG3_1	19	KI270923.1	=	NT_187677.1	alt-scaffold
HSCHR19LRC_LRC_I_CTG3_1	19	GL949748.2	=	NW_003571056.2	alt-scaffold
HSCHR19KIR_FH08_A_HAP_CTG3_1	19	KI270929.1	=	NT_187683.1	alt-scaffold
HSCHR19KIR_FH08_BAX_HAP_CTG3_1	19	KI270930.1	=	NT_187684.1	alt-scaffold
HSCHR19KIR_FH13_A_HAP_CTG3_1	19	KI270931.1	=	NT_187685.1	alt-scaffold
HSCHR19KIR_FH13_BA2_HAP_CTG3_1	19	KI270932.1	=	NT_187686.1	alt-scaffold
HSCHR19KIR_FH15_A_HAP_CTG3_1	19	KI270933.1	=	NT_187687.1	alt-scaffold
HSCHR19KIR_RP5_B_HAP_CTG3_1	19	GL000209.2	=	NT_113949.2	alt-scaffold
HSCHR19LRC_LRC_J_CTG3_1	19	GL949749.2	=	NW_003571057.2	alt-scaffold
HSCHR19LRC_LRC_S_CTG3_1	19	GL949750.2	=	NW_003571058.2	alt-scaffold
HSCHR19LRC_LRC_T_CTG3_1	19	GL949751.2	=	NW_003571059.2	alt-scaffold
HSCHR19LRC_PGF1_CTG3_1	19	GL949752.1	=	NW_003571060.1	alt-scaffold
HSCHR19LRC_PGF2_CTG3_1	19	GL949753.2	=	NW_003571061.2	alt-scaffold
HSCHR19_4_CTG3_1	19	KI270938.1	=	NT_187693.1	alt-scaffold
HSCHR19KIR_0010-5217-AB_CTG3_1	19	KV575254.1	=	NW_016107308.1	novel patch
HSCHR19KIR_0019-4656-A_CTG3_1	19	KV575246.1	=	NW_016107300.1	novel patch
HSCHR19KIR_0019-4656-B_CTG3_1	19	KV575256.1	=	NW_016107310.1	novel patch
HSCHR19KIR_502960008-1_CTG3_1	19	KV575253.1	=	NW_016107307.1	novel patch
HSCHR19KIR_502960008-2_CTG3_1	19	KV575252.1	=	NW_016107306.1	novel patch
HSCHR19KIR_7191059-1_CTG3_1	19	KV575255.1	=	NW_016107309.1	novel patch
HSCHR19KIR_7191059-2_CTG3_1	19	KV575259.1	=	NW_016107313.1	novel patch
HSCHR19KIR_CA01-TA01_1_CTG3_1	19	KV575247.1	=	NW_016107301.1	novel patch
HSCHR19KIR_CA01-TA01_2_CTG3_1	19	KV575248.1	=	NW_016107302.1	novel patch
HSCHR19KIR_CA01-TB01_CTG3_1	19	KV575250.1	=	NW_016107304.1	novel patch
HSCHR19KIR_CA01-TB04_CTG3_1	19	KV575249.1	=	NW_016107303.1	novel patch
HSCHR19KIR_CA04_CTG3_1	19	KV575257.1	=	NW_016107311.1	novel patch
HSCHR19KIR_HG2393_CTG3_1	19	KV575258.1	=	NW_016107312.1	novel patch
HSCHR19KIR_HG2394_CTG3_1	19	KV575251.1	=	NW_016107305.1	novel patch
HSCHR19KIR_HG2396_CTG3_1	19	KV575260.1	=	NW_016107314.1	novel patch

Region: CYP2D622:42077656-42253758

Sequence name	Chromosome assignment	GenBank ID		RefSeq ID	Scaffold role
HSCHR22_1_CTG1	22	GL383582.2	=	NW_003315971.2	alt-scaffold
HSCHR22_2_CTG1	22	KB663609.1	=	NW_004504305.1	alt-scaffold
HSCHR22_3_CTG1	22	KI270928.1	=	NT_187682.1	alt-scaffold
HSCHR22_4_CTG1	22	KN196485.1	=	NW_009646207.1	novel patch
HSCHR22_5_CTG1	22	KN196486.1	=	NW_009646208.1	novel patch
HSCHR22_6_CTG1	22	KQ458387.1	=	NW_014040930.1	novel patch
HSCHR22_7_CTG1	22	KQ458388.1	=	NW_014040931.1	novel patch
HSCHR22_8_CTG1	22	KQ759761.1	=	NW_015148968.1	novel patch

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	3,099,734,149	473	2,948,611,470	67,794,873	526	349
Chromosome 1	AllAssembled moleculeUnlocalized scaffolds	249,698,942248,956,422742,520	21129	231,223,641230,481,121742,520	121,390,471121,390,471127,682	64640	13130
Chromosome 2	AllAssembled moleculeUnlocalized scaffolds	242,508,799242,193,529315,270	972	240,863,511240,548,241315,270	147,687,514147,687,514161,471	14140	880
Chromosome 3	AllAssembled moleculeUnlocalized scaffolds	198,450,956198,295,559155,397	761	198,255,541198,100,144155,397	104,529,985104,529,985155,397	13130	880
Chromosome 4	AllAssembled moleculeUnlocalized scaffolds	190,424,264190,214,555209,709	1091	189,962,376189,752,667209,709	131,283,174131,283,174209,709	880	10100
Chromosome 5	AllAssembled moleculeUnlocalized scaffolds	181,630,948181,538,25992,689	18171	181,358,067181,265,37892,689	46,425,90046,425,90092,689	19190	19190
Chromosome 6	Assembled molecule	170,805,979	3	170,078,524	110,516,045	10	6
Chromosome 7	Assembled molecule	159,345,973	6	158,970,135	96,829,194	10	7
Chromosome 8	Assembled molecule	145,138,636	6	144,768,136	39,736,957	5	9
Chromosome 9	AllAssembled moleculeUnlocalized scaffolds	138,688,728138,394,717294,011	25214	122,084,564121,790,553294,011	70,114,16570,114,165176,845	21210	23230
Chromosome 10	Assembled molecule	133,797,422	6	133,263,006	92,093,901	30	7
Chromosome 11	AllAssembled moleculeUnlocalized scaffolds	135,186,938135,086,622100,316	761	134,634,058134,533,742100,316	47,073,72647,073,726100,316	10100	990
Chromosome 12	Assembled molecule	133,275,309	9	133,137,821	94,988,110	15	10
Chromosome 13	Assembled molecule	114,364,328	18	97,983,128	67,794,873	1	21
Chromosome 14	AllAssembled moleculeUnlocalized scaffolds	108,136,338107,043,7181,092,620	25178	91,660,76990,568,1491,092,620	88,660,19588,660,195194,050	770	20200
Chromosome 15	AllAssembled moleculeUnlocalized scaffolds	102,439,437101,991,189448,248	871	85,089,57684,641,328448,248	78,704,31578,704,315448,248	990	990
Chromosome 16	AllAssembled moleculeUnlocalized scaffolds	92,211,10490,338,3451,872,759	1091	83,378,70381,805,9441,572,759	43,847,66343,847,6631,872,759	17116	12120
Chromosome 17	AllAssembled moleculeUnlocalized scaffolds	83,836,42283,257,441578,981	13103	83,481,87182,920,216561,655	54,806,56254,806,562185,591	392514	12120
Chromosome 18	Assembled molecule	80,373,285	12	80,089,650	59,352,079	23	14
Chromosome 19	Assembled molecule	58,617,616	7	58,440,758	31,366,742	1	9
Chromosome 20	Assembled molecule	64,444,167	18	63,944,268	33,282,659	61	21
Chromosome 21	Assembled molecule	46,709,983	40	40,088,623	33,734,175	7	42
Chromosome 22	AllAssembled moleculeUnlocalized scaffolds	51,857,51650,818,4681,039,048	45369	40,181,01939,159,7821,021,237	31,264,30131,264,301165,050	25718	38380
Chromosome X	Assembled molecule	156,040,895	9	154,893,034	34,966,268	19	10
Chromosome Y	AllAssembled moleculeUnlocalized scaffolds	57,264,65557,227,41537,240	14131	26,452,28826,415,04837,240	6,276,1296,276,12937,240	44440	12120
unplaced	Assembled molecule	4,485,509	127	4,328,403	161,147	54	0

Molecule	Total Length
Mitochondrion MT	16,569

Region Name	Location	Scaffold Count	Total Length	Ungapped Length	Scaffold N50	Spanned Gaps
REGION108	1:2448811-2791270	1	354,444	304,444	354,444	1
PRAME_REGION_1	1:12818488-13312803	3	1,002,073	1,002,073	278,659	0
REGION200	1:17157487-17460319	1	305,542	305,542	305,542	0
REGION228	1:23237486-23579959	1	349,938	349,938	349,938	0
REGION189	1:26512383-26678582	1	166,200	166,200	166,200	0
REGION246	1:28206357-28366763	1	166,136	166,136	166,136	0
REGION109	1:30352191-30456601	1	109,528	109,528	109,528	0
FOXO6	1:41250328-41436604	1	186,494	186,494	186,494	0
REGION247	1:72287734-72419130	1	140,355	140,355	140,355	0
REGION229	1:103909381-104045121	1	141,019	141,019	141,019	0
REGION240	1:107987825-108539424	1	551,020	551,020	551,020	0
REGION190	1:112909422-113029606	1	122,022	122,022	122,022	0
CEN1	1:122026460-125184587	0	0	0	0	0
1Q21	1:144488706-144674781	1	185,285	185,285	185,285	0
REGION2	1:153700531-153865738	1	182,439	182,439	182,439	0
MTX1	1:155210382-155305245	1	110,268	110,268	110,268	0
REGION3	1:198370083-198725175	1	366,580	366,580	366,580	0
REGION199	1:210220259-210677001	1	460,100	460,100	460,100	0
RNA5S_REGION_1	1:228408802-228753027	1	330,031	330,031	330,031	0
REGION110	1:234163457-234211370	1	50,258	50,258	50,258	0
TBCE	1:235360200-235568613	1	212,205	212,205	212,205	0
REGION111	1:242987893-243895211	1	911,658	911,658	911,658	0
REGION112	1:245305697-245727576	1	425,601	425,601	425,601	0
OLFACTORY_REGION_3	1:248352027-248511794	2	328,046	328,046	165,834	0
REGION113	2:728878-860300	1	136,240	136,240	136,240	0
REGION114	2:1204935-1273724	1	70,887	70,887	70,887	0
REGION115	2:1315177-1541254	1	223,625	223,625	223,625	0
REGION121	2:3391898-3511146	1	120,616	120,616	120,616	0
REGION4	2:36225959-36363315	1	143,390	143,390	143,390	0
IGK	2:88891175-89330679	1	481,245	481,245	481,245	0
REGION116	2:90218337-90402511	2	347,199	347,199	214,158	0
CEN2	2:92188146-94090557	0	0	0	0	0
REGION117	2:115908855-116040717	1	138,019	138,019	138,019	0
REGION118	2:116874515-116981849	1	110,395	110,395	110,395	0
REGION248	2:126189128-126361783	1	181,658	181,658	181,658	0
REGION119	2:131697037-131806107	1	110,099	110,099	110,099	0
REGION44	2:148934069-149024119	1	96,131	96,131	96,131	0
SPC25	2:168830363-168937194	1	123,821	123,821	123,821	0
REGION233	2:205890983-206421450	1	535,088	535,088	535,088	0
REGION249	2:208007848-208142067	1	140,361	140,361	140,361	0
REGION201	2:233054663-233420161	1	365,499	365,499	365,499	0
REGION202	2:239696904-239905046	1	208,149	208,149	208,149	0
REGION120	2:241787903-242117508	3	496,962	496,962	161,578	0
REGION73	3:11815268-11986497	1	173,151	173,151	173,151	0
REGION235	3:16687511-17099186	1	411,654	411,654	411,654	0
REGION122	3:20277967-20382602	1	109,187	109,187	109,187	0
REGION192	3:44474647-44925818	1	451,168	451,168	451,168	0
SLC25A26	3:66023201-66396803	1	373,699	373,699	373,699	0
RYBP	3:72325441-72740399	1	415,308	415,308	415,308	0
REGION250	3:84799968-84960626	1	175,849	175,849	175,849	0
REGION210	3:90528825-90699772	1	165,718	165,718	165,718	0
CEN3	3:90772459-93655574	0	0	0	0	0
REGION191	3:91247723-91553319	1	305,979	284,852	305,979	5
REGION123	3:125665519-125883802	1	224,108	224,108	224,108	0
REGION5	3:151589366-151759498	1	180,671	180,671	180,671	0
REGION124	3:154111571-154282042	1	173,649	173,649	173,649	0
REGION125	3:166300784-166544173	1	248,252	248,252	248,252	0
REGION126	3:184425340-184533338	1	113,034	113,034	113,034	0
MUCIN_REGION_2	3:195629504-195827492	7	1,225,334	1,225,334	165,607	0
REGION127	3:197397856-197558882	1	162,429	162,429	162,429	0
REGION128	3:198047549-198235559	1	184,404	184,404	184,404	0
REGION222	4:14931450-15019028	1	90,922	90,922	90,922	0
REGION129	4:21521367-21734410	1	220,246	220,246	220,246	0
REGION6	4:34517955-34883858	1	376,187	376,187	376,187	0
CEN4	4:49708101-51743951	0	0	0	0	0
REGION130	4:55678095-55785754	1	111,943	111,943	111,943	0
REGION223	4:65880454-66040277	1	163,749	163,749	163,749	0
UGT2B17	4:68306359-69010457	1	586,476	586,476	586,476	0
REGION224	4:69959865-70191926	1	236,512	236,512	236,512	0
REGION131	4:120164199-120317014	1	158,965	158,965	158,965	0
REGION236	4:154079465-154493046	1	420,675	420,675	420,675	0
REGION7	4:155835378-155987264	1	164,536	164,536	164,536	0
REGION132	4:186920392-187048061	1	119,912	119,912	119,912	0
REGION133	4:188341423-188542359	1	205,944	205,944	205,944	0
REGION134	4:189361858-190204555	5	1,614,283	1,614,283	378,547	0
REGION135	5:502435-626896	1	126,136	126,136	126,136	0
SLC12A7	5:981494-1161361	1	179,043	179,043	179,043	0
SLC6A3	5:1318299-1509772	1	195,710	195,710	195,710	0
REGION251	5:3768476-3899281	1	135,987	135,987	135,987	0
REGION9	5:12681426-12744010	1	82,728	82,728	82,728	0
REGION193	5:21098347-21230960	1	139,087	139,087	139,087	0
GUSBP1	5:21481419-21713081	1	362,221	362,221	362,221	0
REGION61	5:29036498-29254469	1	226,852	226,852	226,852	0
REGION136	5:33800665-33963236	1	164,558	164,558	164,558	0
CEN5	5:46485901-50059807	0	0	0	0	0
SMA	5:69216819-71614443	2	2,757,346	2,607,346	1,612,928	2
MCTP1	5:95169857-95254491	1	101,241	101,241	101,241	0
REGION137	5:125279466-125444151	1	172,708	172,708	172,708	0
REGION8	5:162373667-162541648	1	173,459	173,459	173,459	0
REGION138	5:177865465-177996111	2	262,849	262,849	131,892	0
REGION234	5:179235294-179907499	1	673,059	673,059	673,059	0
GCNT2	6:10489117-10731912	1	242,796	242,796	242,796	0
REGION225	6:13101650-13179113	1	82,315	82,315	82,315	0
MHC	6:28510120-33480577	8	33,190,315	27,789,994	4,677,643	98
CEN6	6:58553889-59829934	0	0	0	0	0
REGION211	6:61123605-61470683	1	320,750	320,750	320,750	0
REGION139	6:65774814-65944033	1	175,808	175,808	175,808	0
REGION194	6:67533466-67796090	1	268,330	268,330	268,330	0
REGION140	6:68262879-68402208	1	152,148	152,148	152,148	0
REGION10	6:79350008-79446911	1	124,736	124,736	124,736	0
REGION214	6:82140389-82375901	1	245,716	245,716	245,716	0
CASP8AP2	6:89804656-89941739	1	139,427	139,427	139,427	0
REGION141	6:127654803-128521146	1	870,480	870,480	870,480	0
REGION142	6:166220580-166285980	1	75,005	75,005	75,005	0
REGION99	6:168796076-168951646	1	185,823	185,823	185,823	0
REGION143	6:169724799-169919706	1	197,536	197,536	197,536	0
REGION144	6:170272763-170535221	1	271,782	271,782	271,782	0
REGION145	7:10001-198548	2	348,821	348,821	190,869	0
CEN7	7:58169654-60828234	0	0	0	0	0
HET7	7:61377789-61528020	0	0	0	0	0
REGION146	7:76500982-76722751	1	209,586	209,586	209,586	0
REGION241	7:99092372-99228806	1	142,129	142,129	142,129	0
REGION147	7:103086563-103242097	1	158,166	158,166	158,166	0
REGION242	7:107154479-107622612	1	468,267	468,267	468,267	0
REGION11	7:141633409-141746583	1	119,183	119,183	119,183	0
TRB	7:142038121-143088503	1	1,111,570	1,111,570	1,111,570	0
REGION252	7:143380637-144630931	2	1,270,318	1,270,318	680,662	0
REGION148	7:148214874-148487860	1	271,455	271,455	271,455	0
REGION212	7:154422352-154602937	1	179,932	179,932	179,932	0
REGION149	7:157697532-157820586	1	126,434	126,434	126,434	0
REGION150	7:158267495-158477174	1	209,988	209,988	209,988	0
REGION151	8:718410-2817440	7	2,391,212	2,391,212	318,687	0
DEFENSIN_REGION_1	8:6604731-13171905	2	6,667,758	6,667,758	6,367,528	0
REGION243	8:21395510-21659610	1	265,876	265,876	265,876	0
ADAM5	8:39094318-39873856	1	624,492	624,492	624,492	0
CEN8	8:44033745-45877265	0	0	0	0	0
REGION244	8:57022151-57173350	1	156,998	156,998	156,998	0
REGION152	8:57173351-57303398	1	141,812	141,812	141,812	0
REGION153	8:128554723-128925740	1	374,415	374,415	374,415	0
REGION154	8:141333447-141461079	1	133,535	133,535	133,535	0
REGION155	8:141766834-141800272	1	36,640	36,640	36,640	0
REGION156	8:143009713-143163398	1	158,983	158,983	158,983	0
REGION157	8:143509961-143828794	1	305,841	305,841	305,841	0
SLC39A4	8:144269398-144434518	1	165,120	165,120	165,120	0
REGION158	8:144628750-144757761	1	132,244	132,244	132,244	0
REGION14	9:7428994-7577169	1	162,988	162,988	162,988	0
REGION226	9:8983671-9142737	1	163,882	163,882	163,882	0
REGION227	9:24949709-25079413	1	134,099	134,099	134,099	0
CEN9	9:43236168-45518558	0	0	0	0	0
REGION13	9:69413743-69477097	1	71,551	71,551	71,551	0
MAMDC2	9:70024113-70189318	1	171,286	171,286	171,286	0
REGION15	9:88179047-88227980	1	60,032	60,032	60,032	0
LPPR1	9:100948798-101378291	1	439,082	439,082	439,082	0
ABO	9:133174055-133504070	1	330,164	330,164	330,164	0
REGION16	10:27285655-27417608	1	179,254	179,254	179,254	0
REGION205	10:38918270-39338430	1	420,164	420,164	420,164	0
CEN10	10:39686683-41593521	0	0	0	0	0
REGION159	10:42103240-42298939	1	181,496	181,496	181,496	0
REGION18	10:45175233-45468971	1	309,802	309,802	309,802	0
REGION216	10:65503225-65684914	1	185,507	185,507	185,507	0
REGION195	10:74797382-75073121	1	277,797	277,797	277,797	0
REGION160	10:77761309-77931226	1	188,315	188,315	188,315	0
PTEN	10:87784179-88048756	1	264,545	264,545	264,545	0
REGION204	10:124109957-124195365	1	85,284	85,284	85,284	0
REGION203	10:131588434-131607480	1	14,347	14,347	14,347	0
REGION104	11:470360-678681	1	210,133	210,133	210,133	0
MUCIN_REGION_1	11:937258-1207515	3	522,263	522,263	196,940	0
KRTAP_REGION_2	11:1523474-1740879	2	391,717	391,717	214,625	0
REGION105	11:2767814-3065846	1	296,895	296,895	296,895	0
OLFACTORY_REGION_2	11:7779133-7972558	2	407,611	407,611	204,059	0
REGION19	11:25170407-25319080	1	154,407	154,407	154,407	0
OLFACTORY_REGION_4	11:49958373-50099251	1	140,877	140,877	140,877	0
CEN11	11:51078349-54425074	0	0	0	0	0
OLFACTORY_REGION_1	11:56189252-56873567	2	392,407	392,407	200,998	0
REGION106	11:69165291-69229344	1	67,707	67,707	67,707	0
REGION215	11:92232311-92410192	1	181,958	181,958	181,958	0
SLC37A4	11:118978401-119087276	1	108,875	108,875	108,875	0
REGION107	11:134773600-134962792	1	186,169	186,169	186,169	0
REGION50	12:10001-173298	1	167,313	167,313	167,313	0
REGION217	12:1033530-1135924	1	109,323	109,323	109,323	0
REGION253	12:1657857-2698722	1	1,046,838	1,046,838	1,046,838	0
PRH1_PRR4	12:10801295-11377386	3	1,020,710	1,020,710	572,349	0
REGION206	12:12031003-12572035	1	541,038	541,038	541,038	0
REGION196	12:17717409-17928910	1	211,377	211,377	211,377	0
REGION21	12:27996034-28110778	1	120,804	120,804	120,804	0
OVOS2	12:31111480-31347345	1	238,139	238,139	238,139	0
CEN12	12:34769408-37185252	0	0	0	0	0
REGION22	12:57932737-58092755	1	169,178	169,178	169,178	0
REGION23	12:58929265-59060870	1	138,655	138,655	138,655	0
REGION255	12:86094144-86261655	1	174,808	174,808	174,808	0
REGION232	12:86768210-87083988	1	315,610	315,610	315,610	0
REGION24	12:101111599-101258295	1	152,874	152,874	152,874	0
REGION254	12:121594225-121658918	1	64,689	64,689	64,689	0
REGION207	12:122057735-122145576	1	86,533	86,533	86,533	0
REGION161	12:123826509-123945954	1	119,498	119,498	119,498	0
REGION20	12:126227198-126405474	1	184,319	184,319	184,319	0
REGION162	12:130323076-130394967	1	76,061	76,061	76,061	0
REGION163	12:131543020-131584984	1	56,134	56,134	56,134	0
CEN13	13:16000001-18051248	0	0	0	0	0
BAGE5	13:18171249-18358106	1	356,766	356,766	356,766	0
REGION164	13:18698351-18884136	1	191,684	191,684	191,684	0
REGION165	13:25652362-25828680	1	180,306	180,306	180,306	0
REGION166	13:70341886-70442876	1	103,832	103,832	103,832	0
REGION218	13:84294441-84452423	1	168,146	168,146	168,146	0
REGION197	13:86269523-86292877	1	35,455	35,455	35,455	0
REGION167	13:89598964-89764093	1	169,134	169,134	169,134	0
REGION208	13:100900735-101049613	1	148,762	148,762	148,762	0
REGION219	13:108604134-108722945	1	123,480	123,480	123,480	0
REGION168	13:112182875-112505943	1	306,913	306,913	306,913	0
REGION169	13:113727531-113763795	1	37,287	37,287	37,287	0
REGION209	13:113936976-114147229	1	206,320	206,320	206,320	0
CEN14	14:16000001-18173523	0	0	0	0	0
REGION256	14:23699022-24389954	1	690,932	690,932	690,932	0
REGION257	14:63664049-63829157	1	171,798	171,798	171,798	0
REGION170	14:91535865-91854371	1	322,166	322,166	322,166	0
IGH	14:92885439-94394539	1	1,511,111	1,511,111	1,511,111	0
SERPIN_REGION_1	14:104449322-104622880	1	180,703	180,703	180,703	0
REGION171	14:105533003-106860219	1	1,351,393	1,351,393	1,351,393	0
CEN15	15:17000001-19725254	0	0	0	0	0
PRADER_WILLI	15:21242091-23226874	4	1,265,819	1,265,819	327,382	0
REGION25	15:27865714-32946929	3	7,823,305	6,079,372	5,161,414	5
TRIM69	15:44676664-44913053	1	244,917	244,917	244,917	0
MEGF11	15:65908183-66284818	1	388,773	388,773	388,773	0
REGION172	15:82289984-82641774	1	430,880	430,880	430,880	0
RAB11FIP3	16:400855-531525	1	134,193	134,193	134,193	0
REGION173	16:1871895-1933852	1	63,982	63,982	63,982	0
REGION221	16:2820536-2873621	1	59,016	59,016	59,016	0
PAM16	16:4299637-4530534	1	232,857	232,857	232,857	0
REGION174	16:14427144-16998739	1	2,659,700	2,659,700	2,659,700	0
REGION245	16:21176310-22760988	1	1,927,115	1,927,115	1,927,115	0
CEN16	16:36311159-38280682	0	0	0	0	0
REGION26	16:55772981-55968548	1	192,462	192,462	192,462	0
SNTB2	16:69140151-69224690	1	89,672	89,672	89,672	0
REGION220	16:71137292-71399966	1	267,463	267,463	267,463	0
CTRB1_CTRB2	16:75169811-75248387	1	78,609	78,609	78,609	0
REGION213	16:75930096-76091406	1	169,136	169,136	169,136	0
DOC2B_RPH3AL	17:60001-402637	2	513,412	513,412	375,691	0
RFLNB	17:402638-722442	1	281,919	281,919	281,919	0
ABR	17:960754-1449331	2	548,456	548,456	391,357	0
WDR81	17:1569973-1767739	1	196,688	196,688	196,688	0
POLR2A	17:7379544-7534268	1	154,723	154,723	154,723	0
REGION238	17:18239627-18506313	1	276,292	276,292	276,292	0
CEN17	17:22813680-26885980	0	0	0	0	0
CCL5_TBC1D3	17:35765469-38841755	2	3,202,874	3,202,874	2,877,074	0
KRTAP_REGION_1	17:40850733-41432935	4	569,697	569,697	133,151	0
MAPT	17:45309498-46903773	2	3,245,182	3,195,182	1,821,992	1
REGION237	17:52434177-52673566	1	246,895	246,895	246,895	0
REGION28	17:70306278-70524219	1	223,995	223,995	223,995	0
REGION175	17:71584518-71819311	1	235,827	235,827	235,827	0
REGION176	17:72833331-72935743	1	108,763	108,763	108,763	0
REGION30	17:77220730-77299326	1	90,219	90,219	90,219	0
B3GNTL1	17:82922720-83103577	1	178,921	178,921	178,921	0
CEN18	18:15460900-20861206	0	0	0	0	0
REGION230	18:22388680-22588100	1	205,101	205,101	205,101	0
REGION177	18:43667277-43773892	1	111,737	111,737	111,737	0
CTIF	18:48514982-48918117	1	407,387	407,387	407,387	0
REGION31	18:50292194-50574792	1	289,831	289,831	289,831	0
REGION32	18:51662936-51821642	1	164,789	164,789	164,789	0
REGION33	18:67423723-67552551	1	198,278	148,278	198,278	1
REGION258	18:70423088-70510260	1	93,070	93,070	93,070	0
REGION34	18:72933122-73024781	1	104,552	104,552	104,552	0
REGION35	18:78493467-78664469	2	342,011	342,011	174,061	0
REGION36	18:78934886-79088997	2	317,257	317,257	159,547	0
REGION178	18:79563122-79725366	1	167,999	167,999	167,999	0
ELANE	19:821158-881412	1	61,734	61,734	61,734	0
SBNO2	19:1107414-1158195	1	52,969	52,969	52,969	0
ZNF66	19:20663141-21042381	1	385,657	385,657	385,657	0
REGION37	19:21648290-21809032	1	170,222	170,222	170,222	0
REGION39	19:22120850-22300666	1	188,024	188,024	188,024	0
CEN19	19:24498981-27190874	0	0	0	0	0
REGION38	19:34152260-34300950	1	155,864	155,864	155,864	0
GPI	19:34350807-34392977	1	43,156	43,156	43,156	0
REGION231	19:38590365-38995717	1	405,389	405,389	405,389	0
FCGBP	19:39740125-40095774	1	370,917	370,917	370,917	0
CEACAM_REGION_1	19:41456581-41682000	1	233,762	233,762	233,762	0
LRC_KIR	19:54025634-55084318	50	16,258,256	13,515,256	729,520	17
REGION40	20:17771102-17893471	1	128,386	128,386	128,386	0
CEN20	20:26436233-30038348	0	0	0	0	0
REGION179	20:61886306-62008187	1	118,774	118,774	118,774	0
REGION181	20:63414721-63471095	1	58,661	58,661	58,661	0
REGION180	20:64095055-64274842	1	183,433	183,433	183,433	0
CEN21	21:10864561-12915808	0	0	0	0	0
REGION41	21:14424141-14475471	1	63,917	63,917	63,917	0
REGION182	21:17146893-17310433	1	166,743	166,743	166,743	0
REGION183	21:17603695-17744061	1	143,900	143,900	143,900	0
REGION42	21:22102474-22296968	1	201,197	201,197	201,197	0
REGION43	21:32769079-32837937	1	74,653	74,653	74,653	0
TMEM50B	21:33405429-33512559	1	116,689	116,689	116,689	0
SPATC1L	21:46140942-46221322	1	82,692	82,692	82,692	0
CEN22	22:12954789-15054318	0	0	0	0	0
IGL	22:22373449-22624257	1	259,914	259,914	259,914	0
REGION184	22:23354043-23516062	1	186,262	186,262	186,262	0
REGION185	22:23763639-24013509	1	304,135	304,135	304,135	0
APOL5	22:35685234-35942668	1	263,666	263,666	263,666	0
REGION186	22:36779214-36877704	1	101,331	101,331	101,331	0
APOBEC	22:38884294-39011160	1	96,924	96,924	96,924	0
CYP2D6	22:42077656-42253758	8	1,198,357	1,198,357	156,562	0
SHANK3	22:50663907-50764925	1	101,037	101,037	101,037	0
REGION187	X:319338-601516	2	558,878	558,878	284,869	0
REGION239	X:4950957-5129468	1	188,004	188,004	188,004	0
CENX	X:58605580-62412542	0	0	0	0	0
REGION188	X:79965154-80097082	1	144,206	144,206	144,206	0
REGION259	Y:9034110-9132718	1	48,370	48,370	48,370	0
CENY	Y:10316945-10544039	0	0	0	0	0
REGION260	Y:21578942-21828659	1	209,722	209,722	209,722	0
REGION198	Y:56821510-56887902	1	101,150	101,150	101,150	0
REGION1A	15:1-5161414	0	0	0	0	0

Unit Name	Scaffold Count	Total Length	Ungapped Length	Scaffold N50	Spanned Gaps
PATCHES	123	44,562,299	43,163,955	467,143	11
ALT_REF_LOCI_1	187	54,245,475	51,588,932	366,580	34
ALT_REF_LOCI_2	26	17,588,862	17,068,855	4,795,265	7
ALT_REF_LOCI_3	7	7,015,451	6,002,357	4,604,811	13
ALT_REF_LOCI_4	3	5,932,942	4,694,420	4,677,643	18
ALT_REF_LOCI_5	3	6,091,554	4,405,067	4,827,813	24
ALT_REF_LOCI_6	3	5,773,241	4,920,582	4,606,388	7
ALT_REF_LOCI_7	3	6,081,976	5,321,960	4,929,269	18
ALT_REF_LOCI_8	2	873,231	753,231	796,479	3
ALT_REF_LOCI_9	1	1,066,800	1,066,800	1,066,800	0
ALT_REF_LOCI_10	1	248,807	248,807	248,807	0
ALT_REF_LOCI_11	1	170,399	170,399	170,399	0
ALT_REF_LOCI_12	1	157,053	157,053	157,053	0
ALT_REF_LOCI_13	1	171,027	171,027	171,027	0
ALT_REF_LOCI_14	1	204,239	204,239	204,239	0
ALT_REF_LOCI_15	1	209,512	209,512	209,512	0
ALT_REF_LOCI_16	1	155,532	155,532	155,532	0
ALT_REF_LOCI_17	1	170,698	170,698	170,698	0
ALT_REF_LOCI_18	1	184,499	184,499	184,499	0
ALT_REF_LOCI_19	1	170,680	170,680	170,680	0
ALT_REF_LOCI_20	1	205,194	205,194	205,194	0
ALT_REF_LOCI_21	1	170,665	170,665	170,665	0
ALT_REF_LOCI_22	1	184,516	184,516	184,516	0
ALT_REF_LOCI_23	1	190,932	190,932	190,932	0
ALT_REF_LOCI_24	1	123,111	123,111	123,111	0
ALT_REF_LOCI_25	1	170,701	170,701	170,701	0
ALT_REF_LOCI_26	1	198,005	198,005	198,005	0
ALT_REF_LOCI_27	1	282,224	282,224	282,224	0
ALT_REF_LOCI_28	1	187,935	187,935	187,935	0
ALT_REF_LOCI_29	1	189,352	189,352	189,352	0
ALT_REF_LOCI_30	1	186,203	186,203	186,203	0
ALT_REF_LOCI_31	1	200,773	200,773	200,773	0
ALT_REF_LOCI_32	1	170,148	170,148	170,148	0
ALT_REF_LOCI_33	1	215,732	215,732	215,732	0
ALT_REF_LOCI_34	1	170,537	170,537	170,537	0
ALT_REF_LOCI_35	1	177,381	177,381	177,381	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50