U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Rnor4.1

Organism name:
Rattus norvegicus (Norway rat)
Infraspecific name:
Strain: BN/SsNHsdMCW
BioProject:
PRJNA10629
Submitter:
Rat Genome Sequencing Consortium
Date:
2010/02/05
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000001895.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AABR05
Genome coverage:
about 7x
Sequencing technology:
ABI

IDs: 280758 [UID] 280758 [GenBank]

See Genome Information for Rattus norvegicus

There are 14 assemblies for this organism

See more

History (Show revision history)

Comment

Sequencing is completed to a minimum standard of double strand coverage with a minimum of 2 clones and 2 reads with no ambiguities or 2 chemistries with a minimum of 2 clones and 3 reads with no ambiguities. The ... assembly consensus may be derived from Sanger and/or 454 sequencing platforms which may be supplemented with Solexa and SOLiD data.
 -------------- Genome Center
 Center: Baylor College of Medicine
 Center code: BCM
 Web site: http://www.hgsc.bcm.tmc.edu/
 Contact: hgsc-help@bcm.tmc.edu  more

Global statistics

Total sequence length2,472,228,416
Total ungapped length2,471,873,957
Gaps between scaffolds0
Number of scaffolds187,024
Scaffold N5045,127
Scaffold L5014,621
Number of contigs197,067
Contig N5040,558
Contig L5016,657
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)187,024

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,472,228,416187,0242,471,873,95745,12710,0430