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ASM694v2

Organism name:
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LT2
BioSample:
SAMN02604315
BioProject:
PRJNA241
Submitter:
Washington University Genome Sequencing Center
Date:
2016/01/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
reference genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000006945.2 (latest)
RefSeq assembly accession:
GCF_000006945.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 619341 [UID] 2789968 [GenBank] 4112858 [RefSeq]

See Genome Information for Salmonella enterica

There are 526504 assemblies for this organism

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History (Show revision history)

Comment

Supported by NIH grant 5U 01 AI43283

Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/

EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of ... Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/

The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB;
http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset

This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone.  more

Global statistics

Total sequence length4,951,383
Total ungapped length4,951,383
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000006955.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AE006468.2=NC_003197.2
Plasmid pSLTAE006471.2=NC_003277.2

Assembly statistics

MoleculeTotal
Length
All4,951,383
Chromosome 4,857,450
Plasmid pSLT93,933

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014334155.1Salmonella enterica subsp. enterica serovar Typhimuriumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014334155.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.10100.00
Best-match type99.9998.10100.00

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna