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MmusSOAP1

Organism name:
Mus musculus (house mouse)
Infraspecific name:
Strain: C57BL/6J
Sex:
female
BioSample:
SAMN02981292
BioProject:
PRJNA59879
Submitter:
Broad Institute
Date:
2011/01/06
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000185125.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AEKR01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
121.5x
Sequencing technology:
Illumina GAII; Illumina HiSeq

IDs: 239318 [UID] 239318 [GenBank]

See Genome Information for Mus musculus

There are 23 assemblies for this organism

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History (Show revision history)

Comment

This genome of mouse was de novo assembled using the SOAPdenovo assembler from Illumina sequence data, and is in support of the paper "High quality draft assemblies of mammalian genomes from massively parallel sequence data" published in the Proceedings ... of the National Academy of Sciences.
The 01 versions of WGS projects AEKQ00000000 and AEKR00000000 are assembled from the same sequence reads using different methodologies. The AEKQ00000000 contigs were assembled with ALLPATHS-LG v. 34731, and the AEKR00000000 contigs were assembled with SOAPdenovo v. 1.05.  more

Global statistics

Total sequence length2,561,486,811
Total ungapped length2,256,910,504
Gaps between scaffolds0
Number of scaffolds41,268
Scaffold N50357,132
Scaffold L501,917
Number of contigs391,273
Contig N5015,782
Contig L5041,107
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)391,273

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,561,486,81141,2682,256,910,504357,132350,0050
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