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ASM22429v2

Organism name:
Linum usitatissimum (flax)
BioSample:
SAMN00627887
BioProject:
PRJNA68161
Submitter:
TUFGEN
Date:
2018/03/27
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000224295.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
other v. 02
Expected final version:
no
Genome coverage:
94.0x
Sequencing technology:
Illumina

IDs: 1681641 [UID] 6388268 [GenBank]

See Genome Information for Linum usitatissimum

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length316,167,074
Total ungapped length269,594,799
Gaps between scaffolds0
Number of scaffolds15
Scaffold N5020,483,506
Scaffold L507
Number of contigs24,829
Contig N5023,035
Contig L503,563
Total number of chromosomes and plasmids15
Number of component sequences (WGS or clone)15

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000224305.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome Lu1CP027619.1n/an/a
Chromosome Lu2CP027626.1n/an/a
Chromosome Lu3CP027627.1n/an/a
Chromosome Lu4CP027628.1n/an/a
Chromosome Lu5CP027629.1n/an/a
Chromosome Lu6CP027630.1n/an/a
Chromosome Lu7CP027631.1n/an/a
Chromosome Lu8CP027632.1n/an/a
Chromosome Lu9CP027633.1n/an/a
Chromosome Lu10CP027620.1n/an/a
Chromosome Lu11CP027621.1n/an/a
Chromosome Lu12CP027622.1n/an/a
Chromosome Lu13CP027623.1n/an/a
Chromosome Lu14CP027624.1n/an/a
Chromosome Lu15CP027625.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All316,167,07415269,594,79920,483,50624,8140
Chromosome Lu129,425,369123,962,80229,425,3692,1870
Chromosome Lu225,730,386120,642,69325,730,3861,9010
Chromosome Lu326,636,119122,825,98126,636,1192,0220
Chromosome Lu419,927,942117,267,90519,927,9421,6880
Chromosome Lu517,699,753115,746,13517,699,7531,3790
Chromosome Lu618,078,158116,089,76518,078,1581,5160
Chromosome Lu718,299,719115,673,44618,299,7191,5100
Chromosome Lu823,785,339120,011,28123,785,3391,8700
Chromosome Lu922,091,576118,241,21322,091,5761,8750
Chromosome Lu1018,203,127116,415,82618,203,1271,4960
Chromosome Lu1119,887,771117,471,93119,887,7711,4490
Chromosome Lu1220,889,232117,229,90920,889,2321,5050
Chromosome Lu1320,483,506118,346,36920,483,5061,6470
Chromosome Lu1419,392,306116,531,28419,392,3061,6150
Chromosome Lu1515,636,771113,138,25915,636,7711,1540