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Smansoni_v7

  • Record removed. This version of the assembly has been suppressed.
Organism name:
Schistosoma mansoni (flatworms)
Infraspecific name:
Strain: Puerto Rico
BioSample:
SAMEA2272516
BioProject:
PRJEA36577
Submitter:
Schistosoma Genome Network
Date:
2019/02/06
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000237925.3 (suppressed)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CAACVT01
Genome coverage:
50x

IDs: 3450761 [UID] 11225668 [GenBank]

See Genome Information for Schistosoma mansoni

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length409,579,008
Total ungapped length400,246,314
Gaps between scaffolds0
Number of scaffolds320
Scaffold N5050,458,499
Scaffold L503
Number of contigs602
Contig N505,339,380
Contig L5021
Total number of chromosomes and plasmids9
Number of component sequences (WGS or clone)320

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_000237935.3)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LR214929.1n/an/a0
Chromosome 2LR214930.1n/an/a0
Chromosome 3LR214931.1n/an/a0
Chromosome 4LR214932.1n/an/a0
Chromosome 5LR214933.1n/an/a0
Chromosome 6LR214934.1n/an/a0
Chromosome 7LR214935.1n/an/a0
Chromosome 8LR214936.1n/an/a0
unplacedn/an/an/a311

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All409,552,091319400,219,39750,458,4992820
Chromosome 188,881,357187,785,16988,881,357300
Chromosome 288,385,488187,304,94488,385,488400
Chromosome 350,458,499147,631,54650,458,499450
Chromosome 448,130,368146,967,37748,130,368330
Chromosome 547,279,781146,281,10947,279,781380
Chromosome 625,256,119124,124,25525,256,119460
Chromosome 724,989,083124,694,97124,989,083110
Chromosome 819,288,021119,133,26019,288,02170
unplaced16,883,37531116,296,76655,696320
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion 926,917126,91726,91700