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Source database (GenBank or RefSeq) File type

SM_V9

Organism name:: Schistosoma mansoni (flatworms)
Infraspecific name:: Strain: Puerto Rico
BioSample:: SAMEA2272516
BioProject:: PRJEA36577
Submitter:: Schistosoma Genome Network
Date:: 2021/07/21
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000237925.5 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
Genome coverage:: 260x

IDs: 10921101 [UID] 28886498 [GenBank]

See Genome Information for Schistosoma mansoni

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Comment

Global statistics

Total sequence length	391,422,238
Total ungapped length	391,379,333
Gaps between scaffolds	0
Number of scaffolds	12
Scaffold N50	45,716,228
Scaffold L50	4
Number of contigs	368
Contig N50	4,473,015
Contig L50	23
Total number of chromosomes and plasmids	12
Number of component sequences (WGS or clone)	12

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Assembly Information

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SM_V9 - Genome - Assembly - NCBI
SM_V9 - Genome - Assembly - NCBI

Assembly

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Assembly Definition
Assembly Statistics

Global assembly definition

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Click on the table row to see sequence details in the table to the right

Assembly Unit Name
Primary Assembly
non-nuclear

Assembly Unit: Primary Assembly (GCA_000237935.5)

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	HE601624.3	n/a	n/a
Chromosome PAR1	OU426849.1	n/a	n/a
Chromosome 2	HE601625.3	n/a	n/a
Chromosome PAR2	OU426850.1	n/a	n/a
Chromosome 3	HE601626.3	n/a	n/a
Chromosome 4	HE601627.3	n/a	n/a
Chromosome 5	HE601628.3	n/a	n/a
Chromosome 6	HE601629.3	n/a	n/a
Chromosome 7	HE601630.3	n/a	n/a
Chromosome W	HE601631.3	n/a	n/a
Chromosome Z	OU426848.1	n/a	n/a

Assembly statistics

Primary Assembly
non-nuclear

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	391,395,321	11	391,352,416	45,716,228	356	0
Chromosome 1	87,984,036	1	87,979,212	87,984,036	38	0
Chromosome PAR1	10,680,109	1	10,679,133	10,680,109	7	0
Chromosome 2	45,716,228	1	45,712,375	45,716,228	33	0
Chromosome PAR2	42,949,100	1	42,946,766	42,949,100	18	0
Chromosome 3	49,793,703	1	49,785,434	49,793,703	60	0
Chromosome 4	46,471,565	1	46,466,710	46,471,565	42	0
Chromosome 5	24,128,855	1	24,124,255	24,128,855	46	0
Chromosome 6	24,696,071	1	24,694,971	24,696,071	11	0
Chromosome 7	19,942,475	1	19,940,482	19,942,475	11	0
Chromosome W	5,969,971	1	5,962,048	5,969,971	75	0
Chromosome Z	33,063,208	1	33,061,030	33,063,208	15	0

Molecule	Total Length
Mitochondrion MT	26,917