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ASM43038v1

Organism name:
Campylobacter jejuni 32488 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 32488
Isolate:
NYCB-10-03-5511-C
BioSample:
SAMN02179883
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2013/07/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000430385.1 (latest)
RefSeq assembly accession:
GCF_000430385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 1.4
Genome coverage:
100x
Sequencing technology:
PacBio RS

IDs: 41261 [UID] 737888 [GenBank] 752008 [RefSeq]

See Genome Information for Campylobacter jejuni

There are 78985 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/07/2023 00:51:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,759
CDSs (total)::1,703
Genes (coding)::1,639
CDSs (with protein)::1,639
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::64
CDSs (without protein)::64
Pseudo Genes (ambiguous residues)::0 of 64
Pseudo Genes (frameshifted)::52 of 64
Pseudo Genes (incomplete)::7 of 64
Pseudo Genes (internal stop)::17 of 64
Pseudo Genes (multiple problems)::12 of 64
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,702,398
Total ungapped length1,702,398
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000430395.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006006.1=NC_021834.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,702,398

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter jejuni 32488Campylobacter jejuni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001457695.1Campylobacter jejunitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001457695.1Campylobacter jejunitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7291.2487.93
Best-match type97.7291.2487.93

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna