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ASM43874v2

Organism name:
Listeria monocytogenes (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: J1926
BioSample:
SAMN02203130
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2013/08/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000438745.2 (latest)
RefSeq assembly accession:
GCF_000438745.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 1.4
Genome coverage:
100x
Sequencing technology:
PacBio RS

IDs: 48621 [UID] 754568 [GenBank] 757038 [RefSeq]

See Genome Information for Listeria monocytogenes

There are 60478 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/16/2023 01:14:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,040
CDSs (total)::2,952
Genes (coding)::2,911
CDSs (with protein)::2,911
Genes (RNA)::88
rRNAs::6, 6, 5 (5S, 16S, 23S)
complete rRNAs::6, 6, 5 (5S, 16S, 23S)
tRNAs::67
ncRNAs::4
Pseudo Genes (total)::41
CDSs (without protein)::41
Pseudo Genes (ambiguous residues)::0 of 41
Pseudo Genes (frameshifted)::21 of 41
Pseudo Genes (incomplete)::18 of 41
Pseudo Genes (internal stop)::8 of 41
Pseudo Genes (multiple problems)::6 of 41
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,009,511
Total ungapped length3,009,511
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000438755.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006600.1=NC_021840.1
Plasmid unnamedCP006614.1=NC_022051.1

Assembly statistics

MoleculeTotal
Length
All3,009,511
Chromosome 2,953,708
Plasmid unnamed55,803

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Listeria monocytogenesListeria monocytogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001466295.1Listeria monocytogenescladeref

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001466295.1Listeria monocytogenescladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4492.5593.46
Best-match type99.4492.5593.46

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna