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BHU1220

Organism name:
Leishmania donovani (kinetoplastids)
Infraspecific name:
Strain: BHU 1220
BioSample:
SAMN01974509
BioProject:
PRJNA192928
Submitter:
CSIR Central Drug Research Institute Lucknow
Date:
2013/09/30
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000470725.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AVPQ01
Assembly method:
Bowtie v. 0.12.9
Expected final version:
no
Reference guided assembly:
GCA_000227135.1
Genome coverage:
275.0x
Sequencing technology:
Illumina HiSeq

IDs: 67781 [UID] 817168 [GenBank]

See Genome Information for Leishmania donovani

There are 12 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length32,414,853
Total ungapped length31,204,622
Gaps between scaffolds0
Number of scaffolds36
Scaffold N501,024,085
Scaffold L5011
Number of contigs2,266
Contig N5041,904
Contig L50207
Total number of chromosomes and plasmids36
Number of component sequences (WGS or clone)2,266

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000470735.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CM002141.1n/an/a
Chromosome 2CM002142.1n/an/a
Chromosome 3CM002143.1n/an/a
Chromosome 4CM002144.1n/an/a
Chromosome 5CM002145.1n/an/a
Chromosome 6CM002146.1n/an/a
Chromosome 7CM002147.1n/an/a
Chromosome 8CM002148.1n/an/a
Chromosome 9CM002149.1n/an/a
Chromosome 10CM002150.1n/an/a
Chromosome 11CM002151.1n/an/a
Chromosome 12CM002152.1n/an/a
Chromosome 13CM002153.1n/an/a
Chromosome 14CM002154.1n/an/a
Chromosome 15CM002155.1n/an/a
Chromosome 16CM002156.1n/an/a
Chromosome 17CM002157.1n/an/a
Chromosome 18CM002158.1n/an/a
Chromosome 19CM002159.1n/an/a
Chromosome 20CM002160.1n/an/a
Chromosome 21CM002161.1n/an/a
Chromosome 22CM002162.1n/an/a
Chromosome 23CM002163.1n/an/a
Chromosome 24CM002164.1n/an/a
Chromosome 25CM002165.1n/an/a
Chromosome 26CM002166.1n/an/a
Chromosome 27CM002167.1n/an/a
Chromosome 28CM002168.1n/an/a
Chromosome 29CM002169.1n/an/a
Chromosome 30CM002170.1n/an/a
Chromosome 31CM002171.1n/an/a
Chromosome 32CM002172.1n/an/a
Chromosome 33CM002173.1n/an/a
Chromosome 34CM002174.1n/an/a
Chromosome 35CM002175.1n/an/a
Chromosome 36CM002176.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All32,414,8533631,204,6221,024,0852,2300
Chromosome 1283,4301272,725283,430350
Chromosome 2334,0971316,823334,097360
Chromosome 3389,9071384,893389,907150
Chromosome 4479,4421462,557479,442410
Chromosome 5452,4261442,886452,426260
Chromosome 6529,5591522,182529,559370
Chromosome 7604,7541566,246604,754350
Chromosome 8505,7001472,302505,700370
Chromosome 9588,7271565,272588,727280
Chromosome 10558,1681546,429558,168440
Chromosome 11580,2221554,642580,222570
Chromosome 12569,5611524,678569,561470
Chromosome 13649,8131631,235649,813380
Chromosome 14638,5051606,809638,505590
Chromosome 15618,3571591,295618,357410
Chromosome 16698,4041672,474698,404440
Chromosome 17671,4821645,696671,482530
Chromosome 18735,6111710,898735,611550
Chromosome 19735,1141660,138735,114760
Chromosome 20752,6191737,650752,619560
Chromosome 21766,2771753,707766,277460
Chromosome 22704,7071647,242704,707650
Chromosome 23783,2721765,534783,272690
Chromosome 24877,1241854,382877,124630
Chromosome 25897,8801882,545897,880440
Chromosome 261,058,25711,040,0101,058,257480
Chromosome 271,024,0851949,3801,024,085730
Chromosome 281,171,70511,137,6351,171,705460
Chromosome 291,258,24911,202,2781,258,2491020
Chromosome 301,374,15711,341,9291,374,157850
Chromosome 311,531,28811,460,9881,531,2881330
Chromosome 321,559,91111,539,6081,559,911760
Chromosome 331,453,97611,413,2121,453,976850
Chromosome 341,750,85611,688,0131,750,8561450
Chromosome 352,113,96611,979,0522,113,9661340
Chromosome 362,713,24512,661,2772,713,2451560