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Leptospirillum group IV UBA BS

Organism name:
Leptospirillum sp. Group IV 'UBA BS' (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN02471615
BioProject:
PRJNA176861
Submitter:
University of California Berkeley
Date:
2013/11/07
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
GenBank assembly accession:
GCA_000496115.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AURA01
Assembly method:
phredPhrap v. Apr-2007
Expected final version:
yes
Genome coverage:
3.3x
Sequencing technology:
Sanger

IDs: 80071 [UID] 855928 [GenBank]

See Genome Information for Leptospirillum sp. Group IV 'UBA BS'

History (Show revision history)

Comment

Global statistics

Total sequence length1,522,162
Total ungapped length1,482,862
Gaps between scaffolds0
Number of scaffolds296
Scaffold N506,787
Scaffold L5076
Number of contigs689
Contig N503,011
Contig L50162
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)689

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,522,1622961,482,8626,7873930

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leptospirillum sp. Group IV 'UBA BS'Leptospirillum sp. Group IV 'UBA BS'

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000755505.1Leptospirillum ferriphilumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.630.660.41

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena