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M252

Organism name:
Drosophila simulans (flies)
Infraspecific name:
Strain: M252
Sex:
female
BioSample:
SAMN02713493
BioProject:
PRJNA243121
Submitter:
Vetmeduni
Date:
2014/06/10
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000820565.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JMCE01
Assembly method:
CLC NGS Cell v. 5.0.1
Expected final version:
yes
Genome coverage:
180.0x
Sequencing technology:
Illumina HiSeq

IDs: 244031 [UID] 1479848 [GenBank]

See Genome Information for Drosophila simulans

There are 42 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length121,269,740
Total ungapped length120,417,941
Gaps between scaffolds0
Number of scaffolds2,948
Scaffold N5021,106,324
Scaffold L503
Number of contigs10,743
Contig N50117,617
Contig L50293
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)2,948

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_000820575.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2LJMCE01000001.1n/an/a1
Chromosome 2RJMCE01000003.1n/an/a1
Chromosome 3LJMCE01000005.1n/an/a1
Chromosome 3RJMCE01000007.1n/an/a1
Chromosome 4JMCE01000009.1n/an/a0
Chromosome XJMCE01000012.1n/an/a1
unplacedn/an/an/a2,936

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule121,252,2172,947120,400,67121,106,3247,7940
Chromosome 2LAllAssembled moleculeUnlocalized scaffolds21,141,29721,106,32434,97321121,027,07320,997,96829,10521,106,32421,106,32434,97382778443000
Chromosome 2RAllAssembled moleculeUnlocalized scaffolds19,280,41818,996,377284,04121119,207,40318,948,148259,25518,996,37718,996,377284,041746525221000
Chromosome 3LAllAssembled moleculeUnlocalized scaffolds22,521,15622,263,419257,73721122,450,35722,215,945234,41222,263,41922,263,419257,737715517198000
Chromosome 3RAllAssembled moleculeUnlocalized scaffolds27,244,39026,981,232263,15821127,187,68926,949,542238,14726,981,23226,981,232263,158618400218000
Chromosome 4Assembled molecule1,107,14011,097,9141,107,1401060
Chromosome XAllAssembled moleculeUnlocalized scaffolds20,703,05420,638,01065,04421120,585,25920,521,71163,54820,638,01020,638,01065,0441,4631,44518000
unplacedAssembled molecule9,254,7622,9368,844,97617,6443,3190
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT17,523117,27017,52310