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ASM97884v2

Organism name:
Escherichia coli O157:H7 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: Rafaela_II
BioSample:
SAMN03470766
BioProject:
PRJNA280853
Submitter:
Instituto Nacional de Tecnologia Agropecuaria
Date:
2021/10/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000978845.2 (latest)
RefSeq assembly accession:
GCF_000978845.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
200X
Sequencing technology:
PacBio RSII; Illumina MiSeq

IDs: 11162631 [UID] 29445708 [GenBank] 29575188 [RefSeq]

See Genome Information for Escherichia coli

There are 264989 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/17/2023 08:07:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,667
CDSs (total)::5,531
Genes (coding)::5,206
CDSs (with protein)::5,206
Genes (RNA)::136
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::106
ncRNAs::8
Pseudo Genes (total)::325
CDSs (without protein)::325
Pseudo Genes (ambiguous residues)::0 of 325
Pseudo Genes (frameshifted)::135 of 325
Pseudo Genes (incomplete)::179 of 325
Pseudo Genes (internal stop)::67 of 325
Pseudo Genes (multiple problems)::48 of 325
Pseudo Genes (short protein)::4 of 325
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,639,358
Total ungapped length5,639,358
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000978855.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP076230.1=NZ_CP076230.1
Plasmid pO157CP076231.1=NZ_CP076231.1

Assembly statistics

MoleculeTotal
Length
All5,639,358
Chromosome 5,544,602
Plasmid pO15794,756

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli O157:H7Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001281725.1Escherichia colicladeref

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001281725.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9192.0697.97
Best-match type99.9192.0697.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna