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ASM105707v1

Organism name:
Bacillus subtilis subsp. subtilis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 516_BAMY
BioSample:
SAMN03197710
BioProject:
PRJNA267549
Submitter:
University of Washington
Date:
2015/07/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001057075.1 (latest)
RefSeq assembly accession:
GCF_001057075.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JVEA01
Assembly method:
ABYSS v. 1.3.5
Genome coverage:
17x
Sequencing technology:
Illumina HiSeq

IDs: 365631 [UID] 1869448 [GenBank] 2007298 [RefSeq]

See Genome Information for Bacillus subtilis

There are 1031 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from Steve Salipante, University of Washington Department of Laboratory Medicine, Box 357110, 1959 NE Pacific Street, NW120 Seattle, WA 98195-7110
The organism was changed from "Bacillus amyloliquefaciens" to "Bacillus subtilis subsp. subtilis" in July 2016.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_001057075.1
Current Name::Bacillus subtilis subsp. subtilis
Previous Name::Bacillus amyloliquefaciens
Date Updated::2016-07-12
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_000344745.1
A1 Name::Bacillus subtilis subsp. subtilis
A1 ANI::98.60711%
A1 Query Coverage::94%
A1 Subject Coverage::89%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_000196735.1
A2 Name::Bacillus amyloliquefaciens
A2 ANI::80.94804%
A2 Query Coverage::32%
A2 Subject Coverage::32%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length3,998,125
Total ungapped length3,998,125
Number of contigs42
Contig N50370,352
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)42

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,998,125423,998,125370,35200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus subtilis subsp. subtilisBacillus subtilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000009045.1Bacillus subtilis subsp. subtilis str. 168type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000009045.1Bacillus subtilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6094.8189.92
Best-match type98.6094.8189.92

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna