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ASM105805v1

Organism name:
Enterococcus faecium (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 704_EFCM
BioSample:
SAMN03197909
BioProject:
PRJNA267549
Submitter:
University of Washington
Date:
2015/07/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001058055.1 (latest)
RefSeq assembly accession:
GCF_001058055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JUWJ01
Assembly method:
ABYSS v. 1.3.5
Genome coverage:
31x
Sequencing technology:
Illumina HiSeq

IDs: 366141 [UID] 1870458 [GenBank] 2004378 [RefSeq]

See Genome Information for Enterococcus faecium

Pathogen Detection Resources

There are 23405 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from Steve Salipante, University of Washington Department of Laboratory Medicine, Box 357110, 1959 NE Pacific Street, NW120 Seattle, WA 98195-7110

Global statistics

Total sequence length2,837,538
Total ungapped length2,837,538
Number of contigs608
Contig N509,715
Contig L5086
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)608

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,837,5386082,837,5389,71500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faeciumEnterococcus faecium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001544255.1Enterococcus faecium NBRC 100486type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001544255.1Enterococcus faeciumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.6880.7092.15
Best-match type99.6880.7092.15

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna