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Source database (GenBank or RefSeq) File type

ASM105971v1

Organism name:: Escherichia coli (E. coli)
Taxonomy check:: OK
Infraspecific name:: Strain: 982_ECOL
BioSample:: SAMN03198203
BioProject:: PRJNA267549
Submitter:: University of Washington
Date:: 2015/07/10
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_001059715.1 (latest)
RefSeq assembly accession:: GCF_001059715.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JULB01
Assembly method:: ABYSS v. 1.3.5
Genome coverage:: 23x
Sequencing technology:: Illumina HiSeq

IDs: 366961 [UID] 1872098 [GenBank] 2005378 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 266864 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001059715.1	=	GCF_001059715.1	ASM105971v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Source DNA available from Steve Salipante, University of Washington Department of Laboratory Medicine, Box 357110, 1959 NE Pacific Street, NW120 Seattle, WA 98195-7110

Global statistics

Total sequence length	4,993,978
Total ungapped length	4,993,949
Gaps between scaffolds	0
Number of scaffolds	340
Scaffold N50	56,111
Scaffold L50	27
Number of contigs	342
Contig N50	56,111
Contig L50	27
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	340

	ANI	Query coverage	Subject coverage
Declared type	98.37	90.12	85.43
Best-match type	98.37	90.12	85.43

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ASM105971v1

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 266864 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

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