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ASM106853v1

Organism name:
Stenotrophomonas maltophilia (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 1030_SMAL
BioSample:
SAMN03196995
BioProject:
PRJNA267549
Submitter:
University of Washington
Date:
2015/07/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001068535.1 (latest)
RefSeq assembly accession:
GCF_001068535.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JWFN01
Assembly method:
ABYSS v. 1.3.5
Genome coverage:
22x
Sequencing technology:
Illumina HiSeq

IDs: 371371 [UID] 1880928 [GenBank] 2020498 [RefSeq]

See Genome Information for Stenotrophomonas maltophilia

Pathogen Detection Resources

There are 1916 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from Steve Salipante, University of Washington Department of Laboratory Medicine, Box 357110, 1959 NE Pacific Street, NW120 Seattle, WA 98195-7110

Global statistics

Total sequence length4,932,835
Total ungapped length4,932,835
Number of contigs308
Contig N5037,420
Contig L5042
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)308

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,932,8353084,932,83537,42000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Stenotrophomonas maltophiliaStenotrophomonas maltophilia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000597745.1Stenotrophomonas maltophilia MTCC 434type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000597745.1Stenotrophomonas maltophiliatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.8484.7085.59
Best-match type97.8484.7085.59

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna