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ASM107574v1

  • Anomalous assembly.
Organism name:
Staphylococcus epidermidis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 926_SEPI
BioSample:
SAMN03198144
BioProject:
PRJNA267549
Submitter:
University of Washington
Date:
2015/07/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
  • genome length too large
GenBank assembly accession:
GCA_001075745.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JUNI01
Assembly method:
ABYSS v. 1.3.5
Genome coverage:
24x
Sequencing technology:
Illumina HiSeq

IDs: 374981 [UID] 1888138 [GenBank]

See Genome Information for Staphylococcus epidermidis

There are 4824 assemblies for this organism

See more

History (Show revision history)

Comment

Source DNA available from Steve Salipante, University of Washington Department of Laboratory Medicine, Box 357110, 1959 NE Pacific Street, NW120 Seattle, WA 98195-7110

Global statistics

Total sequence length4,387,575
Total ungapped length4,387,575
Number of contigs565
Contig N5019,950
Contig L5044
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)565

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,387,5755654,387,57519,95000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus epidermidisStaphylococcus epidermidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002087975.1Staphylococcus epidermidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002087975.1Staphylococcus epidermidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.6053.1194.89
Best-match type99.6053.1194.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna