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ASM130320v1

Organism name:
Nitrospira bacterium SG8_3 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
SG8_3
BioSample:
SAMN03994168
BioProject:
PRJNA270657
Submitter:
University of Texas
Date:
2015/09/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001303205.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LJNR01
Assembly method:
IDBA v. UD
Expected final version:
yes
Genome coverage:
120.0x
Sequencing technology:
Illumina

IDs: 497101 [UID] 2363328 [GenBank]

See Genome Information for Nitrospira bacterium SG8_3

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/11/2015 18:28:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,848
CDS::5,253
Pseudo Genes::548
rRNAs::3, 2, 2 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::40
ncRNA::0
Frameshifted Genes::78
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,957,751
Total ungapped length5,957,703
Gaps between scaffolds0
Number of scaffolds733
Scaffold N507,739
Scaffold L50248
Number of contigs736
Contig N507,739
Contig L50248
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)733

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,957,7517335,957,7037,73930

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nitrospira bacterium SG8_3Nitrospira bacterium SG8_3

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000422285.1Desulfatiglans anilinitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.510.090.11

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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