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Source database (GenBank or RefSeq) File type

ASM130330v1

Organism name:

Nitrospira bacterium SG8_35_1 (bacteria)

Taxonomy check:

Inconclusive

Isolate:

SG8_35_1

BioSample:

SAMN03994172

BioProject:

PRJNA270657

Submitter:

University of Texas

Date:

2015/09/30

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_001303305.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

LJTK01

Assembly method:

IDBA v. UD

Expected final version:

yes

Genome coverage:

120.0x

Sequencing technology:

Illumina

IDs: 497151 [UID] 2363428 [GenBank]

See Genome Information for Nitrospira bacterium SG8_35_1

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001303305.1	n/a	n/a	ASM130330v1	Contig	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/18/2015 17:14:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,299
CDS::2,859
Pseudo Genes::408
rRNAs::1 (5S)
complete rRNAs::1 (5S)
partial rRNAs:: 
tRNAs::31
ncRNA::0
Frameshifted Genes::108
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,333,117
Total ungapped length	3,333,117
Number of contigs	357
Contig N50	10,054
Contig L50	114
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	357

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	99.13	0.01	0.01

Assembly

Genome Assembly

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ASM130330v1

See Genome Information for Nitrospira bacterium SG8_35_1

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result