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CG2v2.0

Organism name:
Danio rerio (zebrafish)
Infraspecific name:
Strain: CG2
Sex:
male
BioSample:
SAMN03964926
BioProject:
PRJNA292113
Submitter:
University of Chicago
Date:
2022/05/25
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001483285.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LKPD02
Assembly method:
Discovar de novo v. build 52488
Expected final version:
yes
Genome coverage:
60.0x
Sequencing technology:
Illumina HiSeq

IDs: 12837461 [UID] 33530098 [GenBank]

See Genome Information for Danio rerio

There are 18 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,290,757,476
Total ungapped length1,289,204,376
Gaps between scaffolds0
Number of scaffolds83,094
Scaffold N5040,484
Scaffold L508,878
Number of contigs98,625
Contig N5026,451
Contig L5014,046
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)83,094

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,290,740,88083,0931,289,187,78040,49015,5310
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,596116,59616,59600