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SPRET_EiJ_v1

Organism name:
Mus spretus (western wild mouse)
Infraspecific name:
Strain: SPRET/EiJ
Sex:
female
BioSample:
SAMN04489830
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/04/26
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001624865.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXV01
Assembly method:
SGA v. 0.9.19; SOAP denovo2 v. r240; Dovetail genomics v. August-2015; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 731341 [UID] 3209118 [GenBank]

See Genome Information for Mus spretus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,625,587,472
Total ungapped length2,338,264,942
Gaps between scaffolds0
Number of scaffolds5,404
Scaffold N50131,945,496
Scaffold L509
Number of contigs280,393
Contig N5017,887
Contig L5037,990
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)29,259

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001624875.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM004094.1n/an/a0
Chromosome 2CM004095.1n/an/a0
Chromosome 3CM004096.1n/an/a0
Chromosome 4CM004097.1n/an/a0
Chromosome 5CM004098.1n/an/a0
Chromosome 6CM004099.1n/an/a0
Chromosome 7CM004100.1n/an/a0
Chromosome 8CM004101.1n/an/a0
Chromosome 9CM004102.1n/an/a0
Chromosome 10CM004103.1n/an/a0
Chromosome 11CM004105.1n/an/a0
Chromosome 12CM004106.1n/an/a0
Chromosome 13CM004107.1n/an/a0
Chromosome 14CM004108.1n/an/a0
Chromosome 15CM004109.1n/an/a0
Chromosome 16CM004110.1n/an/a0
Chromosome 17CM004111.1n/an/a0
Chromosome 18CM004112.1n/an/a0
Chromosome 19CM004113.1n/an/a0
Chromosome XCM004104.1n/an/a1
unplacedn/an/an/a5,382

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,625,571,1695,4032,338,248,639131,945,496274,9890
Chromosome 1Assembled molecule198,846,2661177,686,586198,846,26620,6930
Chromosome 2Assembled molecule182,815,9431165,326,971182,815,94316,8890
Chromosome 3Assembled molecule160,222,5581142,960,759160,222,55816,7170
Chromosome 4Assembled molecule152,946,5361136,193,764152,946,53615,6290
Chromosome 5Assembled molecule152,823,6841135,529,864152,823,68415,5680
Chromosome 6Assembled molecule150,978,3881134,400,285150,978,38815,2640
Chromosome 7Assembled molecule136,257,7121120,490,892136,257,71213,6660
Chromosome 8Assembled molecule130,317,7891116,409,912130,317,78912,9020
Chromosome 9Assembled molecule126,249,3031114,310,641126,249,30311,5200
Chromosome 10Assembled molecule131,945,4961118,334,405131,945,49613,2360
Chromosome 11Assembled molecule125,065,4711113,625,683125,065,47111,3300
Chromosome 12Assembled molecule114,123,4901101,995,106114,123,49011,4200
Chromosome 13Assembled molecule117,181,6671104,996,548117,181,66711,4570
Chromosome 14Assembled molecule117,542,9381105,189,762117,542,93811,7480
Chromosome 15Assembled molecule104,786,220193,983,052104,786,22010,4890
Chromosome 16Assembled molecule97,876,770188,241,00097,876,7709,5070
Chromosome 17Assembled molecule94,415,995183,368,10494,415,99510,4760
Chromosome 18Assembled molecule90,668,104182,075,95490,668,1048,3940
Chromosome 19Assembled molecule59,623,150154,087,77059,623,1505,4100
Chromosome XAllAssembled moleculeUnlocalized scaffolds148,803,643148,322,235481,408211128,500,815128,064,064436,751148,322,235148,322,235481,40822,60422,52579000
unplacedAssembled molecule32,080,0465,38220,540,7667,23510,0700
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,303116,30316,30300